Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq273 259 6e-64
seq1177 143 3e-29
>seq273
Length=152475
Score = 259 bits (286), Expect = 6e-64
Identities = 963/1495 (64%), Gaps = 31/1495 (2%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| | |||||| || || || |||| ||
Sbjct 71369 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 71428
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| || || ||| || |||||| | | |||| ||||| | || || ||||||
Sbjct 71429 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCCACACTCTTC 71488
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||| ||||| || |||| ||||| ||| ||||| | | | ||||||||
Sbjct 71489 AACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGAC 71548
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| || | || || || | ||| |||| || ||| ||||| ||| ||| |||
Sbjct 71549 TCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGT 71608
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|| || || | || |||| || | |||| | || |||| || || ||
Sbjct 71609 GGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAAC 71668
Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971
||| || | ||| | | || ||||| || || || ||| ||| || ||||| ||
Sbjct 71669 GGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTC 71728
Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025
|||| | ||| ||| | | || || |||| | || |||||||| ||||||
Sbjct 71729 GACCAGGGTGGCAACAAGCGCCCC---GGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 71785
Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085
|| ||| || | || ||| | || ||||| ||||| || | ||||||| || |
Sbjct 71786 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 71845
Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145
|| || || ||| ||| ||||||||||| || |||||||||||||| || ||| ||| |
Sbjct 71846 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 71905
Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204
|| | ||| ||||| | || || || || || || || || |||| | || ||
Sbjct 71906 GGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGCGA 71964
Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262
||||||||| ||| | ||| |||||||| | ||| | | | | | || ||| ||
Sbjct 71965 GGAGTTTGAGGCCTTGTACGAGAAGTACGA-GCAGATGGGCAAGGGTC-GCAAGACCATG 72022
Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321
||| | || | | ||| | || || ||| || | || ||||||||||||| || |
Sbjct 72023 AAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTT 72081
Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381
||||| ||||| || ||| |||| ||||| || || ||||| | || |||
Sbjct 72082 CATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCG 72141
Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441
|| ||||||||||| || || || | || | | |||||| ||||| ||
Sbjct 72142 CAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTG 72201
Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATT 112500
||||| || || |||| || |||| | ||| || | || || || | | || |
Sbjct 72202 CAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGACT 72260
Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560
| || |||||||| || || | || ||||| |||||| | || ||
Sbjct 72261 TCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGACG 72320
Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620
|| ||||| ||| || ||||| || || ||| | ||||| || || ||||
Sbjct 72321 TCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGGTC 72380
Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCCG 112677
|||||||||| ||||| || |||| ||| | ||| || | | || || ||
Sbjct 72381 TCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTCTC 72437
Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737
||| || || |||| | || || ||||| || || ||||| || ||
Sbjct 72438 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCT---CA 72494
Query 112738 CGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794
| | |||| || |||| ||| || || || || | || | |||||||| || |
Sbjct 72495 CCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTG 72554
Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854
||| || || | || || | ||| |||||| | | || || | || || ||||
Sbjct 72555 TTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACT 72614
Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914
|||| ||| | ||||| | || ||| || | ||| | || ||| |||| | | || |
Sbjct 72615 GGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGC 72674
Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974
| ||||| || ||| |||| | || |||||||| || || || |||||||| |||||||
Sbjct 72675 CCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACA 72734
Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034
| | |||||||| | | | | || || || ||||| | |||||||| |
Sbjct 72735 CCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGC 72794
Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089
|| || | || ||| || || ||||| |||||| | | |||||| | | |||
Sbjct 72795 TCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 72849
>seq1177
Length=83355
Score = 143 bits (158), Expect = 3e-29
Identities = 168/225 (75%), Gaps = 9/225 (4%)
Strand=Plus/Minus
Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155
|||||| |||||||| || || | ||||| || || ||||| |||||||| ||
Sbjct 26930 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 26874
Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215
||| ||||| ||||| || |||| ||| | || || || ||||||||||||
Sbjct 26873 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 26817
Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275
|||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| |||
Sbjct 26816 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 26757
Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|| ||||||||||||||| ||||||||||| ||||| || |||
Sbjct 26756 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 26712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620729620465840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |