Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq273 271 9e-68
seq1327 100 3e-16
>seq273
Length=152475
Score = 271 bits (300), Expect = 9e-68
Identities = 1128/1754 (64%), Gaps = 57/1754 (3%)
Strand=Plus/Minus
Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458
|||| || ||| || || ||||| ||||| || || || |||||| || | ||||
Sbjct 73101 GCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGC 73042
Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518
|| | | ||| | ||||| || ||| | ||| | |||||| |||||
Sbjct 73041 ATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGG 72982
Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTA-ATTTC 109574
|||||||| |||||| || || ||||| | | | ||| || || | || ||
Sbjct 72981 TCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCT----GCGAGATCTC 72926
Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634
||| ||||||||||||| ||||| ||| ||||||| |||||| || || ||
Sbjct 72925 CCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTGGATGGA 72866
Query 109635 GCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTT 109691
||| || | |||| | | |||||| | | ||||| ||||| | |
Sbjct 72865 ---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGAC 72809
Query 109692 GAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGG 109749
|||||| | ||||| | | ||||| || || ||||||||||| || ||
Sbjct 72808 GAGATCCTT--CAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGC 72751
Query 109750 AGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTG 109809
|||||||||| | |||||||| || || ||||| |||||||| | ||| || | |||
Sbjct 72750 TGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTG 72691
Query 109810 GAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGC 109869
|| || |||||||| || | ||||||| ||| |||| ||| | | ||| | | ||
Sbjct 72690 CTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGC 72631
Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCT 109929
|| || || ||||| || | || | | | | || ||| |||||| ||
Sbjct 72630 TCCTTCAAAGCATCCCAGTCCCAGAGATC-CGAG-----GGCTTGACATTCCACATGTCA 72577
Query 109930 GGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACC 109989
|| || | |||| || | |||| ||||||| | | ||| ||| | ||||| ||
Sbjct 72576 TACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCC 72517
Query 109990 TCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA 110049
| ||||| || || || || || || || || ||||| || || |
Sbjct 72516 TTGGCCAGCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTG 72457
Query 110050 TTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCT 110109
|| | | ||||| ||| | | |||||||| | || | | || |||| ||
Sbjct 72456 TTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCA 72397
Query 110110 AGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT 110169
|||||||| ||||||||||| |||||||| || |||||| | ||||| |
Sbjct 72396 AGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGA 72337
Query 110170 ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATT 110229
|| ||||| |||| |||||||| | || || || || || ||||
Sbjct 72336 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACC 72277
Query 110230 TCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG---ACATATTTGGGGAGA 110286
|| ||||| || | | | ||| | | | | ||| || | | ||| | |||| ||
Sbjct 72276 TCGTGGAGCTTCTGGAAGTCGTA-GACTCC--CTCGTTGTAGTCAACAAAGGTGGGCAGG 72220
Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346
|| | || || || ||||| |||| ||| || || ||| || | ||| |||
Sbjct 72219 GCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCC 72160
Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406
|| || | |||||| || || || | ||||||||| || ||| ||||
Sbjct 72159 GTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 72100
Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466
|||||||| ||||||||| | ||| ||||||| || ||||| | || ||| ||||| | |
Sbjct 72099 GCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATAC 72040
Query 110467 CATA-CATCGGCGGCGG---GGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGT 110522
|| | | || | | | || | ||||| | | || || | |||||||||
Sbjct 72039 CAGAGCTTCTGAGCCTTCATGGTC--TTGCGACC-CTTGCCCATC-TGCTCGTACTTCTC 71984
Query 110523 GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GTCGGGAC 110581
||||||| ||||||| |||| ||||| || | || || || || || ||| |
Sbjct 71983 GTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCATTCGTTGGGGC 71925
Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641
| | ||| | ||| | ||| || ||| |||||||||||||| ||||| |||||||| |
Sbjct 71924 ACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGA 71865
Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCA 110701
|| ||||||||||||| ||| |||| || | || ||||| ||| | ||||
Sbjct 71864 GGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCA 71805
Query 110702 AAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA------GACAGCGATGGATCCCT 110755
| ||||| | || ||| | |||||| || || || || || ||| || | ||
Sbjct 71804 AGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCT 71745
Query 110756 TACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815
| | | || |||||| || ||||| || ||| |||||||| | ||||||||| |
Sbjct 71744 T--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGA 71688
Query 110816 TAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGT 110875
| || | ||| ||| || || || ||| || |||| || ||| ||
Sbjct 71687 CGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGT 71628
Query 110876 GGATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGT 110933
||| | | |||||| ||||| ||| ||| || | | ||| | ||| |||| ||
Sbjct 71627 GGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGT 71570
Query 110934 ACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993
|||| ||||| ||||| || || |||| || | | || |||||||| |||| |||
Sbjct 71569 GTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG 71510
Query 110994 AGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--G 111051
| |||| || || || ||||||||||| || | || ||| ||| ||| ||||
Sbjct 71509 GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA--AGAACTTGCTC 71452
Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCA 111111
|||||| |||||| || |||| || || || | ||| ||||||| |||
Sbjct 71451 GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCG 71392
Query 111112 ACTCGCATGAACAT 111125
|| ||||||| |||
Sbjct 71391 ACACGCATGATCAT 71378
>seq1327
Length=91572
Score = 100 bits (110), Expect = 3e-16
Identities = 329/505 (65%), Gaps = 25/505 (5%)
Strand=Plus/Minus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
|||||||| || || || | ||||| | || ||||| ||| | | ||| || | ||
Sbjct 42293 TCGAAACGGCCGGGACGCATCAGAGCCTTGTCGAGAATGTCGGCTCTGTTGGTGCCCGCG 42234
Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| || || | || | ||| | ||| |||||||||||| || ||||| | ||||||
Sbjct 42233 AGCACAACCA--CCTG-CTCCTGGGTGTTGAAACCGTCCATCTCGGTGAGGATCTGGTTC 42177
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCC--GAACGCTTC 11673
| || || ||||| |||||| | ||| | | |||| | || ||
Sbjct 42176 AGGGTAGCCTCGCGCTCGTCGTTGCCGCCCATGCGGTTGCCCTCCTGTCTCGATCG---- 42121
Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
||| | ||||| ||||| || ||||| | || || || ||| || ||| |
Sbjct 42120 --ACCAATGGCGTCGATCTCGTCAATGAAGATAATGCAAGGGGCGTTCTTCCGCGCCGTT 42063
Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791
|||| || || || || | | |||||||| ||||||||||| ||||| | |
Sbjct 42062 GCGAACAGGTCGCGCACTCTGGAAGGACCAACACCGACGAACATCTCGACGAACTCGGAA 42003
Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
| || || | ||||| |||||| || ||||| ||||| |||| || || || |
Sbjct 42002 CCGCTGA-CGCTGAA-GAAGGGCACGCCGGACTCGCCAGCAGTGGCCTTGGCAAGCAGCG 41945
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTC 11911
||||||| || || || | ||||| || | || || ||||||||||||||||| |
Sbjct 41944 TCTTACCGGTTCCGGGAGGTCCAGCCAGGATAGCACCGCGGGGGATCTTGGCACCTAACC 41885
Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971
| ||||||| || |||| | |||| || | |||| | ||| ||||||
Sbjct 41884 GCTCGAAGCGCTCGGGGGTCTTCAAGAAGCTGACGAACTCCATGATCTCCGTCTTGGCCT 41825
Query 11972 AGTCGATACCCTCAACATCGGTGAA 11996
||| || || |||| ||| ||||
Sbjct 41824 CGTCCATGCCGGCAACGTCGCTGAA 41800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588963874456600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |