Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq555 102 7e-17
>seq555
Length=1693913
Score = 102 bits (112), Expect = 7e-17
Identities = 422/667 (63%), Gaps = 68/667 (10%)
Strand=Plus/Minus
Query 29776 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 29835
|||||||| | ||| | ||| || |||| || ||||| || |||||| || ||
Sbjct 977064 CTGGGCTCACGCTCCAACTGCACTTTGAGCGCATCAACGTGGTCAGCGTAGACATGTGCA 977005
Query 29836 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29894
|| |||| | ||| | ||| || || || | || | || | || |||||||
Sbjct 977004 TCGCCCATGACGTGCGTCAAGCTG-CCAGGGACGAGGTCACATGCGCGGGCAATCATGTG 976946
Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954
||| || || | |||||| |||||||| ||||| || ||||| ||||| || | ||||
Sbjct 976945 CGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGCCCATATCGCAGGACCG 976886
Query 29955 CTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC--------------- 29984
|||||| |||||||| || |||||||||
Sbjct 976885 CTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGTCAGCGGGTGCACCGCG 976826
Query 29985 -GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCAT 30029
|||| ||||| ||||| | ||||| ||||| || || || |||||
Sbjct 976825 GGCTCGCGGGTAGGAGACGTAGAACTGCGCAAACATG---TGGCATGGCGGGAGGGCCAT 976769
Query 30030 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30089
| ||| ||||||||| |||| | || |||||| | ||| | || || |
Sbjct 976768 CTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGT 976709
Query 30090 CCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30143
| | | || | || ||||| ||||| || || ||| |||| ||| ||
Sbjct 976708 CTTCAGCTTGTGGATGACCTCGGCG------AGCTGGTCGACGCCCTGGCCCGTGTAATC 976655
Query 30144 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCC 30203
| | | ||| ||||| || || || || | ||| ||||| ||||| || || ||
Sbjct 976654 CGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCC 976595
Query 30204 CAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263
||||| || |||| | |||| || || |||| | || || | || |||||
Sbjct 976594 GAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTT 976535
Query 30264 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGA 30322
| ||||||||||||| || ||| |||| || | |||| |||| ||||| ||
Sbjct 976534 GCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GA 976476
Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAG 30380
|||||||||||||||| | | |||||| | || ||||| | ||| || || |||||
Sbjct 976475 CGAACCACAGCAGCTCAGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAG 976418
Query 30381 GGGAAAC 30387
||| |||
Sbjct 976417 GGGCAAC 976411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408609397895531
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |