Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq273 383 3e-101
seq1177 154 3e-32
>seq273
Length=152475
Score = 383 bits (424), Expect = 3e-101
Identities = 1066/1607 (66%), Gaps = 96/1607 (6%)
Strand=Plus/Minus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | ||| |||||||||||| ||||| || ||||||||||| |||||
Sbjct 73128 ACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 73069
Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTT-TCTTCAGCTTAATATT 212668
||||| ||| ||||||| | ||||| |||| ||| |||| | || |
Sbjct 73068 AGGCCGAGCTT---CCAGCCGGCGAAATGCAT-GCTG---GTTATCTTGCCC---ATGGT 73019
Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728
| |||| | || || || | ||| || ||||| |||||| ||||| | |
Sbjct 73018 CGGGTCCT--TCATG-------TGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACC 72968
Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788
| ||| || ||||| | | | | | ||| |||| |||||| || |||||| | |
Sbjct 72967 ACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAG 72908
Query 212789 TTCTTTGAGGTCCTCTG--GGAA-GCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGT 212845
| |||| |||| | |||| | |||||||||||| | || || || | | |
Sbjct 72907 GGCCTTGA---CCTCAGTAGGAATGTTGGGGATGTTCTGGATGGAACC---GT-TCTCGG 72855
Query 212846 CA--GCTGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCA 212901
|| | ||| | |||| | ||| ||| || ||| || | || ||| | |
Sbjct 72854 CAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGA 72795
Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961
| ||||||||| | |||||| ||||| | || || | | |||||| | ||| || |
Sbjct 72794 GCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGG 72735
Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021
|||||||||| | || ||||||||| |||| ||||| | |||||||| || |||||||
Sbjct 72734 TGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGG 72675
Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG---AAGCTCTG 213078
| || || || ||| ||| | || ||||||| || | || || ||||
Sbjct 72674 GCGCGACGAGAAGAGAGTTGCGGACACCGTGCT-GCTTAATCTGCTCCTTCAAAGCAT-- 72618
Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138
|||||||||| || ||| | ||| || |||||||||||| |||| | ||
Sbjct 72617 CCCAGTCCCAG---------AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGA 72567
Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198
|||| | || ||| |||| ||| | ||||||||| | ||||||||||||||
Sbjct 72566 TGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT 72507
Query 213199 CGCAG-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTC 213257
||| ||| |||||||||| ||||||||| || || |||| | ||||||| |
Sbjct 72506 -GCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCG 72448
Query 213258 TTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317
||||| || ||| ||||||||| | |||| ||||||| || ||||||
Sbjct 72447 CGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGG 72388
Query 213318 ACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTA 213376
|| |||| |||||||| | ||| | || ||| ||| |||| ||||| | |||||
Sbjct 72387 ACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTA 72329
Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436
|||| ||||||||| |||| ||||||||| | || | |||||| | | ||
Sbjct 72328 GTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAG 72269
Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGAT 213490
| || | || ||||| | || || | ||||| ||||||||||
Sbjct 72268 CTTCTGG------AAGTCGTAGACTCCCTCGTTGTAGTCAACAAAGGTGGGCAGGGCGAG 72215
Query 213491 GCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCA 213550
|||||||||||| || || ||||| | || | |||||| || ||||| |||||
Sbjct 72214 CGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCA 72155
Query 213551 CAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATC 213610
|||||| || ||||| ||||| ||||||| ||||| ||| |||||| | |||
Sbjct 72154 GAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 72095
Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAG 213668
||||||||||||| ||||| || ||||| ||||| | | || || ||| ||||
Sbjct 72094 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGAT--GGCATACCAG 72037
Query 213669 AGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAG 213728
|| | | ||||| || | || | | | | | |||||||| |||||
Sbjct 72036 AGCTTCTGAGCCTT---CATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTAC 71980
Query 213729 AGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATG 213788
| | | || || | ||| || | |||| || || || ||| ||||||
Sbjct 71979 AAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATG 71920
Query 213789 AGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGC 213847
|| |||||||||| | | |||| || |||| |||||| ||||| || | ||| || ||
Sbjct 71919 AGAGTCCAGTCCCCATTCTTCTCC-ACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGC 71861
Query 213848 GGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAA 213907
| ||| ||||| | || | ||| ||| || ||| ||||||| ||| | ||
Sbjct 71860 GAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAA 71801
Query 213908 GTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG-- 213965
||| |||| || |||||||| ||||| | ||| ||||| || || || || | ||||
Sbjct 71800 GTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTT 71741
Query 213966 -CCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCA 214020
|| |||||||| || | || | || ||||||||| || || | || || |
Sbjct 71740 GCCACCCTGGTCGACG----TAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGA 71685
Query 214021 GCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCA 214080
|||||||| ||||| || || || ||||| ||||||| ||| | || |||
Sbjct 71684 CACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGC---GGATGCGG- 71629
Query 214081 TGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123
|||| ||| || ||||||||||| ||||||||||||||||||
Sbjct 71628 TGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 71582
>seq1177
Length=83355
Score = 154 bits (170), Expect = 3e-32
Identities = 348/517 (67%), Gaps = 11/517 (2%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | |||||||||||||| ||||| || ||| |||||||||||
Sbjct 26409 CTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 26468
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957
||||||| |||||||||| | || || ||| ||||| ||| | ||| |
Sbjct 26469 CATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCATTGCCGAGAGCAACCAAGA 26527
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
|| | || || || |||| ||||| | ||| ||| || ||||||||| | || |
Sbjct 26528 GGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAG 26587
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
|||| ||||| || || ||||||| ||| |||| || || || | | || |
Sbjct 26588 CGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGATGATGT 26647
Query 48078 GCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134
|| || | || ||| || | || ||| ||||| | ||||| | |||||
Sbjct 26648 CCTCAATGACCTGCTTGCTGGGGCGGTTCTTG---AGGTGAGAG---TAGAGGAGGCAGG 26701
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
| ||||| |||| | || || || || ||| ||| ||||||||||| ||||| |
Sbjct 26702 CGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGG 26761
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||| | || | || ||||||||||| || | ||||| | || ||||||||| |
Sbjct 26762 GCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 26821
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314
|||| || || ||||| || ||| | || |||| || | |||| || ||||
Sbjct 26822 CCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCGCTAATCC 26881
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
| || |||||||| |||||||| |||||| ||
Sbjct 26882 ACTTCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGG 26918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931513622068480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |