Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq273 383 3e-101 seq1177 154 3e-32 >seq273 Length=152475 Score = 383 bits (424), Expect = 3e-101 Identities = 1066/1607 (66%), Gaps = 96/1607 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| ||||| || ||||||||||| ||||| Sbjct 73128 ACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 73069 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTT-TCTTCAGCTTAATATT 212668 ||||| ||| ||||||| | ||||| |||| ||| |||| | || | Sbjct 73068 AGGCCGAGCTT---CCAGCCGGCGAAATGCAT-GCTG---GTTATCTTGCCC---ATGGT 73019 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | || || || | ||| || ||||| |||||| ||||| | | Sbjct 73018 CGGGTCCT--TCATG-------TGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACC 72968 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | | | | ||| |||| |||||| || |||||| | | Sbjct 72967 ACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAG 72908 Query 212789 TTCTTTGAGGTCCTCTG--GGAA-GCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGT 212845 | |||| |||| | |||| | |||||||||||| | || || || | | | Sbjct 72907 GGCCTTGA---CCTCAGTAGGAATGTTGGGGATGTTCTGGATGGAACC---GT-TCTCGG 72855 Query 212846 CA--GCTGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCA 212901 || | ||| | |||| | ||| ||| || ||| || | || ||| | | Sbjct 72854 CAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGA 72795 Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961 | ||||||||| | |||||| ||||| | || || | | |||||| | ||| || | Sbjct 72794 GCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGG 72735 Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021 |||||||||| | || ||||||||| |||| ||||| | |||||||| || ||||||| Sbjct 72734 TGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGG 72675 Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG---AAGCTCTG 213078 | || || || ||| ||| | || ||||||| || | || || |||| Sbjct 72674 GCGCGACGAGAAGAGAGTTGCGGACACCGTGCT-GCTTAATCTGCTCCTTCAAAGCAT-- 72618 Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 |||||||||| || ||| | ||| || |||||||||||| |||| | || Sbjct 72617 CCCAGTCCCAG---------AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGA 72567 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 |||| | || ||| |||| ||| | ||||||||| | |||||||||||||| Sbjct 72566 TGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT 72507 Query 213199 CGCAG-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTC 213257 ||| ||| |||||||||| ||||||||| || || |||| | ||||||| | Sbjct 72506 -GCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCG 72448 Query 213258 TTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317 ||||| || ||| ||||||||| | |||| ||||||| || |||||| Sbjct 72447 CGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGG 72388 Query 213318 ACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTA 213376 || |||| |||||||| | ||| | || ||| ||| |||| ||||| | ||||| Sbjct 72387 ACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTA 72329 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 |||| ||||||||| |||| ||||||||| | || | |||||| | | || Sbjct 72328 GTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAG 72269 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGAT 213490 | || | || ||||| | || || | ||||| |||||||||| Sbjct 72268 CTTCTGG------AAGTCGTAGACTCCCTCGTTGTAGTCAACAAAGGTGGGCAGGGCGAG 72215 Query 213491 GCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCA 213550 |||||||||||| || || ||||| | || | |||||| || ||||| ||||| Sbjct 72214 CGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCA 72155 Query 213551 CAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATC 213610 |||||| || ||||| ||||| ||||||| ||||| ||| |||||| | ||| Sbjct 72154 GAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 72095 Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAG 213668 ||||||||||||| ||||| || ||||| ||||| | | || || ||| |||| Sbjct 72094 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGAT--GGCATACCAG 72037 Query 213669 AGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAG 213728 || | | ||||| || | || | | | | | |||||||| ||||| Sbjct 72036 AGCTTCTGAGCCTT---CATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTAC 71980 Query 213729 AGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATG 213788 | | | || || | ||| || | |||| || || || ||| |||||| Sbjct 71979 AAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATG 71920 Query 213789 AGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGC 213847 || |||||||||| | | |||| || |||| |||||| ||||| || | ||| || || Sbjct 71919 AGAGTCCAGTCCCCATTCTTCTCC-ACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGC 71861 Query 213848 GGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAA 213907 | ||| ||||| | || | ||| ||| || ||| ||||||| ||| | || Sbjct 71860 GAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAA 71801 Query 213908 GTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG-- 213965 ||| |||| || |||||||| ||||| | ||| ||||| || || || || | |||| Sbjct 71800 GTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTT 71741 Query 213966 -CCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCA 214020 || |||||||| || | || | || ||||||||| || || | || || | Sbjct 71740 GCCACCCTGGTCGACG----TAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGA 71685 Query 214021 GCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCA 214080 |||||||| ||||| || || || ||||| ||||||| ||| | || ||| Sbjct 71684 CACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGC---GGATGCGG- 71629 Query 214081 TGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 |||| ||| || ||||||||||| |||||||||||||||||| Sbjct 71628 TGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 71582 >seq1177 Length=83355 Score = 154 bits (170), Expect = 3e-32 Identities = 348/517 (67%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || ||| ||||||||||| Sbjct 26409 CTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 26468 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| |||||||||| | || || ||| ||||| ||| | ||| | Sbjct 26469 CATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCATTGCCGAGAGCAACCAAGA 26527 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || || |||| ||||| | ||| ||| || ||||||||| | || | Sbjct 26528 GGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAG 26587 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| ||||| || || ||||||| ||| |||| || || || | | || | Sbjct 26588 CGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGATGATGT 26647 Query 48078 GCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || || | || ||| || | || ||| ||||| | ||||| | ||||| Sbjct 26648 CCTCAATGACCTGCTTGCTGGGGCGGTTCTTG---AGGTGAGAG---TAGAGGAGGCAGG 26701 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||| | || || || || ||| ||| ||||||||||| ||||| | Sbjct 26702 CGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGG 26761 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || ||||||||||| || | ||||| | || ||||||||| | Sbjct 26762 GCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATAC 26821 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || ||| | || |||| || | |||| || |||| Sbjct 26822 CCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCGCTAATCC 26881 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | || |||||||| |||||||| |||||| || Sbjct 26882 ACTTCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGG 26918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513622068480