Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq273 188 9e-43
seq1177 96.9 4e-15
>seq273
Length=152475
Score = 188 bits (208), Expect = 9e-43
Identities = 965/1508 (64%), Gaps = 57/1508 (4%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||||| ||||| | || ||| || || ||| |||| |||
Sbjct 71369 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 71428
Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329
| || || ||| || |||||| |||| | | ||| |||||| | || || ||||
Sbjct 71429 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCCACACTCT 71486
Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388
|||| || ||||| || || || ||| ||||| ||||||||| ||| || ||||||
Sbjct 71487 TCAACGCCGGTACCCCTCAGGCC-CAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAG 71545
Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGG 75446
||||| || | |||||||||| || || | || | ||||| | ||||| ||| ||
Sbjct 71546 GACTCTATTGAGGGTATCTATGACACCCTCA-AGACT-TGCGCCATGATCTCCAAGATGG 71603
Query 75447 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 75506
| || || ||||| | || |||| | | |||| || |||| || |
Sbjct 71604 CCGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCA 71663
Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566
| || ||| || | ||| | | || ||||| || || || ||| ||| || ||||
Sbjct 71664 CGAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCT 71723
Query 75567 ATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622
| || | | || | ||| ||| || | |||| | ||| | || || |||
Sbjct 71724 ACGTCGA-CCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGG 71782
Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682
|| |||||| || | || ||| | || || || ||||| || | || |||| |||
Sbjct 71783 CACGCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGC 71842
Query 75683 TGTAGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740
| || |||||| | |||| |||||||| ||||| ||||||||| |||| |||
Sbjct 71843 GCCCGTGA--CCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGA 71900
Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTG 75799
|| ||| | ||| |||| | || || || || || || || || |||||
Sbjct 71901 AGAATGGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTAC 71959
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA--AGAGG----AGGGTAGAGCCAAT 75853
|| ||||||||||| ||| | ||| ||||| || ||| | ||||| | |||
Sbjct 71960 GGCGAGGAGTTTGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG---CAA- 72015
Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912
||| | || | | || | | ||| | || || ||| | | ||||| ||||||||
Sbjct 72016 --GACCAT-GAAGGCTCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGG 72072
Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972
| || | ||||| ||||||||||| ||| ||||| ||||| ||||| | ||
Sbjct 72073 TAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 72132
Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032
|| ||| ||||| || || |||||||| ||| | |||||| | ||||||
Sbjct 72133 CACTATCCGCAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGT 72192
Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT------CAATGAAGAGAC 76086
||||| ||||| |||| || ||||||| || | | ||| ||| | || ||
Sbjct 72193 CGCTGTCTGCAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACG-AGGGAG 72251
Query 76087 TCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAA 76146
|| | || | | || || || || |||| || | ||| | || || ||
Sbjct 72252 TC-----TACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAA 72306
Query 76147 CCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACA 76206
| || |||| ||| || || || ||| || || || || || ||||| ||
Sbjct 72307 CAGAATCATCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCA 72366
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG- 76265
| | || || ||| | ||||| || ||||| || |||| || | ||| || |
Sbjct 72367 CCGCCCCATCGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCG-TATGC 72425
Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325
| || || || || || || | || ||||| || ||||| || ||||
Sbjct 72426 CCTTCGAGTCTCCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACG 72485
Query 76326 CATCCCTGGAGGCGAGT-TGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383
| |||| | || ||| | |||| | | | || |||| |||| | ||
Sbjct 72486 CTGCCCT--CACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGA 72543
Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC--AAG 76441
|||||| || | || || || | || |||| ||| |||| |||| || || || |
Sbjct 72544 GGGTTCCCCTGTTTCTCAGGGCATCCTCCAGTATGACATGT-GGAATGTCAAGCCCTCGG 72602
Query 76442 CTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501
|| || |||||||||| | | ||||| | || ||| || | ||| | || ||| |
Sbjct 72603 ATC-TCTGGGACTGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCT 72661
Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561
||| | | || || ||||| || ||| |||| | || |||||||| || || || |||
Sbjct 72662 CTTCTCGTCGCGCCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGC 72721
Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621
||||| || ||||| | |||||||||| | | | || || |||||||| ||
Sbjct 72722 TTTGAGCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTT 72781
Query 76622 GTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681
|||||| ||| | || || ||| | || ||||| |||||| | | ||||||
Sbjct 72782 GTCAACCCTTGGCTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAG 72841
Query 76682 GATCTCAT 76689
| | |||
Sbjct 72842 AACCGCAT 72849
>seq1177
Length=83355
Score = 96.9 bits (106), Expect = 4e-15
Identities = 141/198 (71%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079
|||||||| | ||||| |||| ||| || || ||||| |||||||||| ||
Sbjct 26906 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTC---CTCCTTCGCCCAG 26850
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139
|| || |||| || || || ||||||||||||||| ||| | ||| | | ||
Sbjct 26849 CGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 26790
Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199
| ||| | |||||||| ||||| ||||| || || |||||| || || || || ||
Sbjct 26789 TTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCT 26730
Query 65200 CGAGATGAGGGTCTCCAC 65217
|| ||||||||||| |||
Sbjct 26729 CGTGATGAGGGTCTTCAC 26712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596557318123360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |