Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq636 233 2e-55
seq273 190 2e-42
seq411 152 6e-31
seq485 134 2e-25
seq1177 129 7e-24
>seq636
Length=343522
Score = 233 bits (258), Expect = 2e-55
Identities = 285/389 (73%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| |
Sbjct 153863 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 153922
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||||||||||||||||| ||| || | || ||||| || |||||| || | |
Sbjct 153923 CTCACCGAGGCCGACATCCAGCCCCAGCTGAACCGCCGCCGTCCCGGCCAGAGCTCCATC 153982
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| || ||||| ||||| ||||||||| |||| ||| ||||| ||| |||| ||
Sbjct 153983 ACGACCCCGCGAAACGAAAAGGATCGCGTCGTCATTCAGAGCGGCACCGAGTTCGGCGTC 154042
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337
|| |||||| | || ||||| | | || ||| |||||||| ||| ||||
Sbjct 154043 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAACGAGGACCAGCGCCCCAAGGACTAC 154102
Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| ||| |||| || | | || || ||||| |||||||||| |||||| | |
Sbjct 154103 GGCAACTCCACCATGGACATGTTCCCCCGCCCCTCCCACGCCGACTGGACCTACCTCGAG 154162
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
|||||||| ||||||| || |||||||| ||||| || || |||||||||||| ||
Sbjct 154163 AAGTACGGAGTCAAGGCCTCCTCGGGCGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 154222
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||||| ||||||||||| ||||||||||
Sbjct 154223 CGCGTTGCCGCCGGCGCCCTCGCCGAGAA 154251
Score = 140 bits (154), Expect = 4e-27
Identities = 129/161 (80%), Gaps = 3/161 (2%)
Strand=Plus/Plus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
||||||||||| |||||||| || || ||||| ||||||| ||| | | |||||||
Sbjct 154484 GAGGACAGCATTGGCGGCACTGTCACCTGCGTCATTCGCAACCCGCCCTCCGCCCTCGGC 154543
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| |||
Sbjct 154544 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCCCATGCCATGCTCAGCATCCCCGCC 154603
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202
|||||||| |||||||| ||| |||| || |||| ||||
Sbjct 154604 ACCAAGGGCTTCGAGATCGGC-TCGGGCTTCGGCGGCTGCG 154643
>seq273
Length=152475
Score = 190 bits (210), Expect = 2e-42
Identities = 338/495 (68%), Gaps = 15/495 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| ||||| |||||||| || |||| ||||||||
Sbjct 71734 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGA 71675
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | || | ||||| |||||| | ||| || | ||
Sbjct 71674 GGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACC 71615
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| |||||| ||||||||| | ||||| ||||| ||||| ||||| |||||
Sbjct 71614 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTC 71555
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || | || | || ||
Sbjct 71554 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 71495
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||||||| ||||| | || ||||| |||| | |||||| || ||||||
Sbjct 71494 GGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGT 71435
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||||| || || || || | ||||||
Sbjct 71434 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCGAC 71390
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| | |||| | | |||| | |||| ||||| ||
Sbjct 71389 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGA 71330
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || ||| ||| ||| ||||| || || |||||||| | | ||||||
Sbjct 71329 TCTCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 71270
Query 1630545 GGCGTCGAGGGCATC 1630559
| ||| || ||||
Sbjct 71269 AGAGTCAAGCTCATC 71255
Score = 95.1 bits (104), Expect = 1e-13
Identities = 318/501 (63%), Gaps = 2/501 (0%)
Strand=Plus/Minus
Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160
||||| |||||||||| | || |||||||| || || || |||| |
Sbjct 72234 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 72175
Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTT 1628219
||| || ||||| ||||| ||||||| | | | | || || ||||||| ||||||
Sbjct 72174 TACTCGATAATCTCCGTGCAGAGGTTGGA-GCTGCGGATAGTGCCAAGGTTCTTCTGGTT 72116
Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279
| | | ||||| |||| ||||||| ||||||| |||| || |||||| |||| ||
Sbjct 72115 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGC 72056
Query 1628280 CGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNN 1628339
| ||| |||||| |||||| || | || || | | || | ||||
Sbjct 72055 CTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGCGACCCTTGCCCATCTG 71996
Query 1628340 NNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGC 1628399
||||| || |||||||||| ||| |||||| ||
Sbjct 71995 CTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 71936
Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459
||| || || | ||| | |||||| ||| || || | | ||| ||||||||
Sbjct 71935 TTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTC 71876
Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519
|||| || ||| || ||||| || || || |||||||||||||||||||||
Sbjct 71875 GGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTT 71816
Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579
| || | |||||| | ||||||||||| ||||| ||||| ||| || ||
Sbjct 71815 GCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGC 71756
Query 1628580 GCCCTTGCGCTTGCCGCCGCC 1628600
|| ||||||| ||| ||
Sbjct 71755 ACCGGGGCGCTTGTTGCCACC 71735
Score = 93.3 bits (102), Expect = 5e-13
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929
|| || || ||||| || |||| || || || |||||||||| ||| || ||| |||
Sbjct 72402 TCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 72343
Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989
|| | || ||||||||||||| |||||| | | ||| ||||||| || |||||||||
Sbjct 72342 TCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGG 72283
Query 1627990 ACGATCTCGTGCAG 1628003
|| |||||| ||
Sbjct 72282 GTGACCTCGTGGAG 72269
Score = 89.7 bits (98), Expect = 6e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393
||||||| || || || || | || || || ||| |||||||||| |||| |
Sbjct 72788 GGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGG 72729
Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453
||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| |
Sbjct 72728 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGA 72669
Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCC 1627513
|||| || |||||||| | |||||||| || || | || || ||||||||||
Sbjct 72668 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCC 72609
Query 1627514 AG 1627515
||
Sbjct 72608 AG 72607
>seq411
Length=561049
Score = 152 bits (168), Expect = 6e-31
Identities = 99/109 (91%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||||||||||||||| || |||||| |||| |||||| | || ||||||
Sbjct 90903 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 90962
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 90963 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 91011
>seq485
Length=336668
Score = 134 bits (148), Expect = 2e-25
Identities = 259/373 (69%), Gaps = 18/373 (5%)
Strand=Plus/Minus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||||||||||| | |||||||| || || |||| | | | |||||||||||||||||||
Sbjct 306138 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 306080
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||||||||| | |||| |||||| ||||
Sbjct 306079 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 306020
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCC---AAATAAGGGGCCACCAGA-GGA 1726867
| ||||| | |||||| | | | ||| ||| || | |||| ||| ||
Sbjct 306019 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCCAGGAACTGCGGGG-----AGATGGT 305965
Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926
| ||| | |||| ||| | |||| || | ||||| || || ||||| || || |
Sbjct 305964 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 305908
Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986
||| || |||||| | | | | | | ||||| ||| |||||| ||
Sbjct 305907 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 305848
Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046
||||||||||| |||||||| ||||| ||||| |||| ||||||||||||| |||||
Sbjct 305847 GAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 305788
Query 1727047 AAGCGCGTCGCCG 1727059
|| |||||||
Sbjct 305787 GAG---GTCGCCG 305778
>seq1177
Length=83355
Score = 129 bits (142), Expect = 7e-24
Identities = 176/244 (72%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| ||| || |||||||||||||| | || |||||
Sbjct 26404 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 26463
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || ||||||| | ||||||| ||| || ||||| | |
Sbjct 26464 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGAGAGCAACC 26523
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA-- 868868
| ||||||||||| |||||||| |||||||| ||| ||| || |||||||||||
Sbjct 26524 AAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGC 26583
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|||||| | ||||| | |||| ||| ||||| | ||| |||| ||| || |||||||
Sbjct 26584 AGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGA 26641
Query 868929 TGAT 868932
||||
Sbjct 26642 TGAT 26645
Score = 113 bits (124), Expect = 6e-19
Identities = 142/194 (73%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||||| |||||| |||| || |||||||| || || |||||
Sbjct 26718 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 26777
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||||| | ||| || ||| ||||| ||||| |||||||| ||
Sbjct 26778 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 26837
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356
| | | ||| |||| ||| ||| |||| | ||| | | | |||||||||| |||
Sbjct 26838 GGCAACGAGACGCTGGGCGAAG-----GAGGACTTCTCATCGCTAATCCACTTCAGGGCC 26892
Query 869357 CAGTCGGCCTTTTT 869370
||||||||||| ||
Sbjct 26893 CAGTCGGCCTTCTT 26906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107004039467099
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