Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq411 152 8e-31
seq906 116 6e-20
seq1177 111 2e-18
seq273 96.9 5e-14
>seq411
Length=561049
Score = 152 bits (168), Expect = 8e-31
Identities = 99/109 (91%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||||||||||||||||||||||||| | || ||||||||||| ||||||
Sbjct 90903 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 90962
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 90963 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 91011
>seq906
Length=279598
Score = 116 bits (128), Expect = 6e-20
Identities = 204/295 (69%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204
|||||||| |||| |||||| | ||| | | ||||| || |||||| | |
Sbjct 137985 GACGTCGTCCGTAACCGCATCAAAGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 138042
Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264
||||||||||| || | || |||||||| |||||| || | || || | ||||| || |
Sbjct 138043 GCCGCCACAAGCTGGTGATTCTCGATGAAGCCGACAGCATGACATCAGGCGCCCAACAAG 138102
Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324
| ||||| || ||||| | ||| ||||||| ||||| || || | ||||||||
Sbjct 138103 CTCTCCGCCGAACGATGGAGATTTACTCCAACACTACGCGCTTCGCCTTCGCCTGCAATC 138162
Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384
||| | | ||||||| | || ||| || ||||||||| | || | || || |
Sbjct 138163 AGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTCCGGTACGCCCGGC 138222
Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439
||||||||| ||| | | | ||| ||| |||| ||||| || || |||||
Sbjct 138223 TCACCGACGAGCAGGTGGTCAAGCGGCTGTTGCAGATCATCGAGGCGGAGAAGGT 138277
>seq1177
Length=83355
Score = 111 bits (122), Expect = 2e-18
Identities = 179/253 (71%), Gaps = 6/253 (2%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | || ||| ||| || |||||||||||||| | |
Sbjct 26396 TGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 26455
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | || ||||||| | | |||| ||| || ||||
Sbjct 26456 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGA 26515
Query 794011 GCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069
| | | |||| ||||||||||| || || ||||||||||| ||| ||| || ||||
Sbjct 26516 GAGCAACCAAG-AGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTC 26574
Query 794070 ATGCCGA--TGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127
||||||| |||||| | ||||| | |||| | | ||||| | ||| |||| ||| |
Sbjct 26575 ATGCCGAGCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAG 26632
Query 794128 CCTCGATGATGAT 794140
| |||| ||||||
Sbjct 26633 CATCGACGATGAT 26645
Score = 102 bits (112), Expect = 1e-15
Identities = 96/120 (80%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| || ||| ||||||| || | || | | || ||||||| ||||||||||||
Sbjct 26983 GTGTCAATAGCGTTGAAGAGGTACGTGCG-CTGGGCAGGCTCCTTGATGTAGGTGTCGAT 27041
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| |||||||||||||| ||||||||||| || || ||| ||||||||||| |||||
Sbjct 27042 GAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAGCCATAGAAGCA 27101
Score = 95.1 bits (104), Expect = 2e-13
Identities = 138/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| || || ||| ||||| |||||| ||| || |||||||| || || |||||
Sbjct 26718 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 26777
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||||| ||| || ||| ||||| ||||| |||||||| ||
Sbjct 26778 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 26837
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517
| | ||||| |||| ||| || | ||| | ||| | | | |||||||||| |||
Sbjct 26838 GGCAACGAGACGCTGGGCGAAGG-----AGGACTTCTCATCGCTAATCCACTTCAGGGCC 26892
Query 794518 CACTCTGCCTTTTT 794531
|| || ||||| ||
Sbjct 26893 CAGTCGGCCTTCTT 26906
>seq273
Length=152475
Score = 96.9 bits (106), Expect = 5e-14
Identities = 262/404 (65%), Gaps = 6/404 (1%)
Strand=Plus/Minus
Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671
||||| ||||||| ||||||||| | ||||| |||| ||||||| |||||| ||||
Sbjct 72135 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 72076
Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731
||| |||||| |||| ||| || |||||| |||| | | | || || |
Sbjct 72075 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCAT---G 72019
Query 2071732 GTCCT-CGCGCG--GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCG 2071788
||| | || | |||| | | ||| ||||| | |||||
Sbjct 72018 GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCG 71959
Query 2071789 TGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC 2071848
| ||| ||| |||||| || ||| ||||| | ||| | |||||| || ||
Sbjct 71958 TAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTC 71899
Query 2071849 ACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908
|||| | ||| || |||||| |||| ||| || || || || || || ||
Sbjct 71898 TCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGA 71839
Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968
||||||||||||||||||||| || || | |||||| || |||||||||||
Sbjct 71838 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAA 71779
Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||| ||||| ||| || || || ||||||| ||| ||
Sbjct 71778 GGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 71735
Score = 86.0 bits (94), Expect = 1e-10
Identities = 350/543 (64%), Gaps = 24/543 (4%)
Strand=Plus/Minus
Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310
||||||||||| ||||| |||| || |||| | | |||||||| |||||||||||
Sbjct 73134 TGGTCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCC 73075
Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-AT--TC 2069367
||||| |||||| | ||| || | ||||| || || || | | || ||
Sbjct 73074 GTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTAT---CTTGCCCATGGTC 73018
Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427
||| | || | |||||||||||| |||||||| ||| | ||||||||
Sbjct 73017 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 72958
Query 2069428 GCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484
||||| | | | || |||| | || | |||||| || |||||| |||||||||||
Sbjct 72957 GCCATCTGCACAACAGT-ACGCTGC--GAGATCTCCCAAACAGTCTTGTACAGGGCCTTG 72901
Query 2069485 AGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGG 2069544
| | | || | | | | | | ||| | || || | | | || |||| |
Sbjct 72900 ACCTCAGTAGGAATGTTGGGG------ATGTTCTGGATGGAACCGTTCTCGGCAATGATG 72847
Query 2069545 CGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGC-- 2069602
|||| | | | | |||||| || | | | | | | || || | | |
Sbjct 72846 CGGTTCTTCATGGCATCGGACCACAGACC-CATGTCGAC--GAGATCCTTCAAGAGCCAA 72790
Query 2069603 -GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATG 2069661
||||||| || || || || | || || || ||| |||||||||| ||| |
Sbjct 72789 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 72730
Query 2069662 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 2069721
||| | |||| ||||||||| ||||||||| || |||| || |||||| ||||
Sbjct 72729 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 72670
Query 2069722 ACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCC 2069781
||||| || |||||||| | |||| ||| | | || || || || |||||||||
Sbjct 72669 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 72610
Query 2069782 CAG 2069784
|||
Sbjct 72609 CAG 72607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916071201098033
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |