Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq368 138 7e-28
seq132 136 3e-27
seq996 111 1e-19
>seq368
Length=453445
Score = 138 bits (152), Expect = 7e-28
Identities = 164/220 (75%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||||| |||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 426403 CAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 426462
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||| || |||||||| || |||||||| | || | |||||||||||
Sbjct 426463 CTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 426522
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| || | ||| || |||| ||| |
Sbjct 426523 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGA 426578
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
| ||||| ||||| |||||||| || ||||||||||||||
Sbjct 426579 TAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 426618
>seq132
Length=157463
Score = 136 bits (150), Expect = 3e-27
Identities = 161/216 (75%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 13078 AGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 13019
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| |||||||||||||| ||||| || |||||||| | || | |||||||||||
Sbjct 13018 TCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 12959
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||||| |||| ||| ||
Sbjct 12958 TGGATCTTCGACTTGAC--AT--TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAAT 12903
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || ||||||||||| || |||||||||||
Sbjct 12902 AGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867
Score = 118 bits (130), Expect = 7e-22
Identities = 144/194 (74%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| |||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 12566 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 12507
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || |||||||||||||| ||||| || |||||||| | || | |||||||||||
Sbjct 12506 TCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 12447
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || ||| ||||| || | ||||| || || |||||| |||| ||| ||
Sbjct 12446 TGGATCTTTGACTTGAC--AT--TGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGAT 12391
Query 34942 GGTCTTTCCCGTGA 34955
|||||| || ||||
Sbjct 12390 GGTCTTGCCGGTGA 12377
Score = 98.7 bits (108), Expect = 6e-16
Identities = 146/205 (71%), Gaps = 8/205 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | |||| ||||||||||||||| || || || ||| | || | ||
Sbjct 12851 CAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTC 12792
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || |||||||||| || |||||||| | || | ||||| |||||
Sbjct 12791 CTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTC 12732
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || ||| ||||| || | ||||| ||| | ||| || |||| ||| |
Sbjct 12731 CTGAATCTTTGACTTGAC--AT--TGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGA 12676
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTAC 34965
||||||| || || || ||||| ||
Sbjct 12675 TGGTCTTGCCGGTAAGCGTCTTGAC 12651
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| || ||||||||| ||||| || || | | |||| ||||
Sbjct 13306 AGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCC 13247
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || || ||||| || || |||||||| | || | |||||||||||
Sbjct 13246 TCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 13187
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | |||| || | |||||| || | || || |||
Sbjct 13186 TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTC 13127
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | |||||| || || || |||||
Sbjct 13126 TTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095
>seq996
Length=339164
Score = 111 bits (122), Expect = 1e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || ||| |||| | || || || ||||| ||||||||||
Sbjct 161320 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 161379
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || |||||||| | || | ||||||||||| | || || |||||
Sbjct 161380 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 161439
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || |
Sbjct 161440 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 161499
Query 34968 A 34968
|
Sbjct 161500 A 161500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325686262429493
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |