Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq368 109 4e-19
seq132 87.8 1e-12
>seq368
Length=453445
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || || | ||||| || || ||| ||| || || |||||||| |||||
Sbjct 426388 ACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 426447
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| |||| || | || ||||| ||||| |||| |||||||| || | ||
Sbjct 426448 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 426507
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| || || || | ||| ||| | ||||||| || ||||
Sbjct 426508 GATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGGAAGACTCCA 426566
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| ||||| || ||||| |||| || || || |||||||||||
Sbjct 426567 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 426615
>seq132
Length=157463
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||| || || ||| ||| || || ||||||||||||||
Sbjct 12866 ACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGA 12807
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || ||| |||| || | || || || || || ||||| |||||||| || | ||
Sbjct 12806 CAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGG 12747
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || |||||||| ||| || || | |||| ||| | ||| || || || |
Sbjct 12746 AATGCCCTCTTTGTCCTGAATCTT-TGACTTGACATTGTCGATGGTATCAGAAGACTCAA 12688
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
| |||| ||||| || || || || | ||| || ||
Sbjct 12687 CCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 12651
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || |||||||| || || || ||||| | || |||| || |||||||| ||
Sbjct 13058 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 12999
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||||| |||||||| || | || | ||| || ||||| || ||| || | |||
Sbjct 12998 AATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTGA-CAT 12940
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | |||||| ||||| || |||| || || || || || || | || || |
Sbjct 12939 TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGA 12880
Query 33737 CAAAGATCTGCATA 33750
| ||||||||||||
Sbjct 12879 CGAAGATCTGCATA 12866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328697401986240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |