Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq273 116 4e-21
>seq273
Length=152475
Score = 116 bits (128), Expect = 4e-21
Identities = 567/887 (64%), Gaps = 24/887 (3%)
Strand=Plus/Minus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || ||||| || || || ||||| | | || | ||| ||| | |||
Sbjct 72786 TTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 72727
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
||||| |||| || ||||| || || || | ||| | || || |||||| ||| ||
Sbjct 72726 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACG 72667
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| | || || || | ||||| | || | |||||||||| | |||||||||
Sbjct 72666 AGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG 72607
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132
| ||||||| | || ||||||||||| |||||||| | || || | ||
Sbjct 72606 AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAA 72547
Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190
|| || |||| |||| || || || |||| | ||| | | || ||| |
Sbjct 72546 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATG--GTGAGGG 72489
Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250
| | | ||| ||||| ||| ||| | ||||| ||| || || || ||||
Sbjct 72488 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGA 72429
Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310
| |||||||| ||| || |||||||| || | |||||||| ||||| ||||| || |
Sbjct 72428 AGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGC 72369
Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAAT 147368
| || |||||| | | || || || | || ||||||||| || || ||
Sbjct 72368 GGTGGCGCATGTTGCT--GTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGAT 72311
Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-AG 147427
|||| ||||| || || || || | || | | ||| |||| ||| || || |
Sbjct 72310 TCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 72251
Query 147428 TCC--CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGC 147485
||| ||| | | || || | | || ||||| || ||||| |||||||| ||
Sbjct 72250 TCCCTCGTTGTAGTCA---ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGC 72194
Query 147486 CGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544
||| || |||| ||| ||||| | || || | ||| |||||| || || |
Sbjct 72193 GACCTCATCAGGCG-CGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGAT-A 72136
Query 147545 CTCCCAA-ATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603
| |||| || | ||| ||||| || || ||| || || ||| |||||||| | ||
Sbjct 72135 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 72076
Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660
|| |||||| || | || | ||| | ||| || | ||| || ||
Sbjct 72075 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC---AGAGCTTCTGAGCCTTCATG 72019
Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720
|| ||| |||| | |||||| ||||||||| ||||||||| ||||||
Sbjct 72018 GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCG 71959
Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA 147767
||||| ||||| ||||| || || | | || ||||| || | |||
Sbjct 71958 TAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCA 71912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476601387766920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |