Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq273 165 1e-34 seq1177 131 2e-24 seq485 91.5 2e-12 >seq273 Length=152475 Score = 165 bits (182), Expect = 1e-34 Identities = 342/504 (68%), Gaps = 19/504 (4%) Strand=Plus/Plus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||| | || ||| |||||||| | | | ||| ||||| |||| ||||| Sbjct 71248 GCACAAGGATGAGCTTGACTCTGCCATCGTCTATGACCGCGACTTCAACTACCAATACTT 71307 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||| ||| | || ||||| ||| | || | | | |||| | Sbjct 71308 CGGCTTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAG 71367 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| |||||||||||||| |||| | |||| || ||||| Sbjct 71368 ACCCCAGCACATGATCATGCGTGTCGCCGTTGG--TATCTGGG-GTGACGACG------- 71417 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGC-AGTTGTTCACCTCA- 259918 | |||| ||| ||| |||||| | |||||| ||| |||| |||| |||| Sbjct 71418 -----TTGAGCGCGTCATCGAAACCTACAACCTGATGTCG-AGCAAGTTCTTCA-CTCAC 71470 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | ||||| ||||| || ||||| || || | | ||| || || ||||| || Sbjct 71471 GCCTCTCCCACACTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTC 71530 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || || || ||||| ||||||||||| |||||| ||||| | Sbjct 71531 GTCGACATGAAGGAGGACTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATG 71590 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| |||||| ||||| ||| | || ||| | |||||| | ||| | Sbjct 71591 ATCTCCAAGATGGCCGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCA 71650 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 || | || ||||| ||||| |||||||| | || || ||||| || || || ||| Sbjct 71651 TATATTGCCGGCACGAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAAC 71710 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||||||||||||| Sbjct 71711 AACACTGCTCGCTACGTCGACCAG 71734 Score = 89.7 bits (98), Expect = 7e-12 Identities = 349/545 (64%), Gaps = 24/545 (4%) Strand=Plus/Plus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCT 262937 |||||||||||| || || || | | || ||||| || | |||||||| | || Sbjct 72607 CTGGGACTGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCT 72666 Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997 ||| |||| |||||| || |||| || ||||||||| ||||||||| |||| || || Sbjct 72667 CGTCGCGCCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 72726 Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057 | | ||| |||||||||| ||| || || || | || || || || ||||| Sbjct 72727 GCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAA 72786 Query 263058 CCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCG 263117 || || | ||| | || | || |||||| | | | | |||| Sbjct 72787 CCCTTGGCTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCG 72846 Query 263118 GCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCT 263177 ||||||| | | || || | ||| | | | || | || | || | Sbjct 72847 CATCATTGCCGAGAACGGTTCCATCCAGAACATCCCCAAC------ATTCCTACTGAGGT 72900 Query 263178 CAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGC 263234 |||||| || | |||||| || |||||| | | | || || ||| | ||||| Sbjct 72901 CAAGGCCCTGTACAAGACTGTTTGGGAGATCTCGCAGCG---TACTGTTGTGCAGATGGC 72957 Query 263235 GGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCC 263294 |||||||| | ||| |||||||| |||||||||||| | || | ||||| Sbjct 72958 TGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCC 73017 Query 263295 GAC---GGCCGAGAGCATCACGTCGATGCA---CGCCTATGCGTGGCGTCGCGGCCTCAA 263348 ||| || | || || || ||||| |||| | ||| | |||||| || Sbjct 73018 GACCATGGGCAAG---ATAACCAGCATGCATTTCGCC---GGCTGGAAGCTCGGCCTGAA 73071 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| ||||||||||| |||||||| | | | ||||| ||||||| ||||||||||| Sbjct 73072 GACGGGCATGTACTACCTGCGCACGCAGGCTGCTGCTGCTCCCATTCAGTTCACCGTCGA 73131 Query 263409 TCAGG 263413 |||| Sbjct 73132 CCAGG 73136 >seq1177 Length=83355 Score = 131 bits (144), Expect = 2e-24 Identities = 237/340 (70%), Gaps = 15/340 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| | || | Sbjct 27315 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 27257 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | | ||| || ||| | ||| Sbjct 27256 TGTCCAAGGATCTCCACG----ACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTC 27201 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||| |||||||||| || |||||| || ||||| || |||||| ||| Sbjct 27200 ATCTCGCACATCCTCGCCTTCTT-CGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGT 27142 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| | || ||||| |||| || || || ||||| || Sbjct 27141 CGAGCGCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 27082 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || ||||||||||| || |||||||||||| ||||||| Sbjct 27081 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGA 27022 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106 || | | || | || ||||||| ||| || ||||| Sbjct 27021 GCCTGCCCAG-CGCACGTACCTCTTCAACGCTATTGACAC 26983 Score = 111 bits (122), Expect = 2e-18 Identities = 182/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||||||| || ||| |||| ||| | ||||| | | |||| | ||||| | ||| Sbjct 26645 ATCATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCC--TTGCG 26588 Query 1456583 CTCA--TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| ||||||||||| ||| | || ||| |||||||||| | ||||| |||||||| Sbjct 26587 CTCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTTGTTGCCGACCG 26530 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||| | | || |||||| || ||| |||| | | ||||||| || | | Sbjct 26529 CCTCTTGGTTGCTCTCGGC-AATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCA 26471 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| || ||| || | || ||| ||| Sbjct 26470 TGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACC 26411 Query 1456760 CCAAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 26410 AGAAGGCCGGTGTCA 26396 Score = 104 bits (114), Expect = 3e-16 Identities = 118/156 (76%), Gaps = 7/156 (4%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| |||||||||| | | | ||| | |||| ||| ||| | Sbjct 26906 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCCCA 26851 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| ||||| | ||| ||||| || ||||| ||||| ||| || ||| | |||| Sbjct 26850 GCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 26791 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| || || ||||||||||| Sbjct 26790 CTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCT 26755 >seq485 Length=336668 Score = 91.5 bits (100), Expect = 2e-12 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| |||| || |||||||||||| |||| | ||||||||| | || || | ||| Sbjct 306004 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 306063 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| || Sbjct 306064 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 306122 Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914 | | || | |||||| |||| |||| Sbjct 306123 CATCGGCGCCGCCGCC--GCCAAGCACC 306148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177652343822814