Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq273 165 1e-34
seq1177 131 2e-24
seq485 91.5 2e-12
>seq273
Length=152475
Score = 165 bits (182), Expect = 1e-34
Identities = 342/504 (68%), Gaps = 19/504 (4%)
Strand=Plus/Plus
Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740
||||||||| | || ||| |||||||| | | | ||| ||||| |||| |||||
Sbjct 71248 GCACAAGGATGAGCTTGACTCTGCCATCGTCTATGACCGCGACTTCAACTACCAATACTT 71307
Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800
|| | ||| ||| | || ||||| ||| | || | | | |||| |
Sbjct 71308 CGGCTTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAG 71367
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|||||| | ||| |||||||||||||| |||| | |||| || |||||
Sbjct 71368 ACCCCAGCACATGATCATGCGTGTCGCCGTTGG--TATCTGGG-GTGACGACG------- 71417
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGC-AGTTGTTCACCTCA- 259918
| |||| ||| ||| |||||| | |||||| ||| |||| |||| ||||
Sbjct 71418 -----TTGAGCGCGTCATCGAAACCTACAACCTGATGTCG-AGCAAGTTCTTCA-CTCAC 71470
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| | ||||| ||||| || ||||| || || | | ||| || || ||||| ||
Sbjct 71471 GCCTCTCCCACACTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTC 71530
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||||| || || || ||||| ||||||||||| |||||| ||||| |
Sbjct 71531 GTCGACATGAAGGAGGACTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATG 71590
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
||||||||| |||||| ||||| ||| | || ||| | |||||| | ||| |
Sbjct 71591 ATCTCCAAGATGGCCGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCA 71650
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
|| | || ||||| ||||| |||||||| | || || ||||| || || || |||
Sbjct 71651 TATATTGCCGGCACGAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAAC 71710
Query 260159 GACACGGCGCGCTACGTCGACCAG 260182
|||| || |||||||||||||||
Sbjct 71711 AACACTGCTCGCTACGTCGACCAG 71734
Score = 89.7 bits (98), Expect = 7e-12
Identities = 349/545 (64%), Gaps = 24/545 (4%)
Strand=Plus/Plus
Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCT 262937
|||||||||||| || || || | | || ||||| || | |||||||| | ||
Sbjct 72607 CTGGGACTGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCT 72666
Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997
||| |||| |||||| || |||| || ||||||||| ||||||||| |||| || ||
Sbjct 72667 CGTCGCGCCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 72726
Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057
| | ||| |||||||||| ||| || || || | || || || || |||||
Sbjct 72727 GCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAA 72786
Query 263058 CCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCG 263117
|| || | ||| | || | || |||||| | | | | ||||
Sbjct 72787 CCCTTGGCTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCG 72846
Query 263118 GCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCT 263177
||||||| | | || || | ||| | | | || | || | || |
Sbjct 72847 CATCATTGCCGAGAACGGTTCCATCCAGAACATCCCCAAC------ATTCCTACTGAGGT 72900
Query 263178 CAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGC 263234
|||||| || | |||||| || |||||| | | | || || ||| | |||||
Sbjct 72901 CAAGGCCCTGTACAAGACTGTTTGGGAGATCTCGCAGCG---TACTGTTGTGCAGATGGC 72957
Query 263235 GGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCC 263294
|||||||| | ||| |||||||| |||||||||||| | || | |||||
Sbjct 72958 TGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCC 73017
Query 263295 GAC---GGCCGAGAGCATCACGTCGATGCA---CGCCTATGCGTGGCGTCGCGGCCTCAA 263348
||| || | || || || ||||| |||| | ||| | |||||| ||
Sbjct 73018 GACCATGGGCAAG---ATAACCAGCATGCATTTCGCC---GGCTGGAAGCTCGGCCTGAA 73071
Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408
||| ||||||||||| |||||||| | | | ||||| ||||||| |||||||||||
Sbjct 73072 GACGGGCATGTACTACCTGCGCACGCAGGCTGCTGCTGCTCCCATTCAGTTCACCGTCGA 73131
Query 263409 TCAGG 263413
||||
Sbjct 73132 CCAGG 73136
>seq1177
Length=83355
Score = 131 bits (144), Expect = 2e-24
Identities = 237/340 (70%), Gaps = 15/340 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| | || |
Sbjct 27315 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 27257
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| | | | ||| || ||| | |||
Sbjct 27256 TGTCCAAGGATCTCCACG----ACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTC 27201
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| |||| |||||||||| || |||||| || ||||| || |||||| |||
Sbjct 27200 ATCTCGCACATCCTCGCCTTCTT-CGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGT 27142
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| | |||||||| | || ||||| |||| || || || ||||| ||
Sbjct 27141 CGAGCGCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 27082
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || ||||||||||| || ||||||||||| || |||||||||||| |||||||
Sbjct 27081 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGA 27022
Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106
|| | | || | || ||||||| ||| || |||||
Sbjct 27021 GCCTGCCCAG-CGCACGTACCTCTTCAACGCTATTGACAC 26983
Score = 111 bits (122), Expect = 2e-18
Identities = 182/255 (71%), Gaps = 8/255 (3%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||||||||| || ||| |||| ||| | ||||| | | |||| | ||||| | |||
Sbjct 26645 ATCATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCC--TTGCG 26588
Query 1456583 CTCA--TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640
||| ||||||||||| ||| | || ||| |||||||||| | ||||| ||||||||
Sbjct 26587 CTCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTTGTTGCCGACCG 26530
Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700
||| | | || |||||| || ||| |||| | | ||||||| || | |
Sbjct 26529 CCTCTTGGTTGCTCTCGGC-AATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCA 26471
Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759
||||| ||||| || | |||||||||||||| || ||| || | || ||| |||
Sbjct 26470 TGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACC 26411
Query 1456760 CCAAGGCCGGCGTCA 1456774
|||||||| ||||
Sbjct 26410 AGAAGGCCGGTGTCA 26396
Score = 104 bits (114), Expect = 3e-16
Identities = 118/156 (76%), Gaps = 7/156 (4%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180
|| |||||||||||||| |||||||||| | | | ||| | |||| ||| ||| |
Sbjct 26906 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCCCA 26851
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239
||| ||||| | ||| ||||| || ||||| ||||| ||| || ||| | ||||
Sbjct 26850 GCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 26791
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||| || || |||||||||||
Sbjct 26790 CTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCT 26755
>seq485
Length=336668
Score = 91.5 bits (100), Expect = 2e-12
Identities = 111/148 (75%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|||||| |||| || |||||||||||| |||| | ||||||||| | || || | |||
Sbjct 306004 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 306063
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886
| | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| ||
Sbjct 306064 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 306122
Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914
| | || | |||||| |||| ||||
Sbjct 306123 CATCGGCGCCGCCGCC--GCCAAGCACC 306148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177652343822814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |