Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq469 100 2e-16
>seq469
Length=208561
Score = 100 bits (110), Expect = 2e-16
Identities = 192/282 (68%), Gaps = 11/282 (4%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||| | || || |||||| | | ||||| | || |||||||| ||||| ||
Sbjct 78722 CCCAAGATTATCAACGGCCCTGAAGTGCTCAATAAGTTCGTCGGTCAATCCGAAGAGAAC 78663
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547
| ||| ||||||| || || || |||| | | || | |||||| | | |||
Sbjct 78662 ATCCGAAAAATGTTTGCCGATGCAGA-GAAGGAGTACAAGGAGAAGGGCGACCAGAGTGG 78604
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT-- 19605
| |||||||| || | || || ||||| || |||| ||||| ||||||||||||
Sbjct 78603 CCTTCACATTATCATCTTTGACGAGTTGGATGCCGTCTGCAAGCAGAGAGGTTCTGGTGC 78544
Query 19606 -------GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658
| | ||| || ||||| ||||||||| || || || | ||| | || ||
Sbjct 78543 TGGTGGCGGTACTGGCGTTGGTGACAGTGTTGTCAACCAGCTTCTTACCAAACTCGATGG 78484
Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700
|||| | || || || || ||||| |||| || ||||| ||
Sbjct 78483 TGTTGATCAGCTCAACAACATTTTGCTTATCGGTATGACCAA 78442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397448021940235
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |