Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq273 215 6e-51 seq1177 105 8e-18 >seq273 Length=152475 Score = 215 bits (238), Expect = 6e-51 Identities = 987/1535 (64%), Gaps = 49/1535 (3%) Strand=Plus/Minus Query 110575 GATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAG 110634 ||| |||||||||||||| | | | ||| | | |||||| | | |||||| || Sbjct 72880 GATGTTCTGGATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAG 72821 Query 110635 ACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAG 110694 ||| || | ||| || || | ||| |||||||| |||||||| || || Sbjct 72820 ACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAG 72761 Query 110695 GGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGAT 110754 | | | |||||||||| | ||||| || |||||||| || || || |||||||| Sbjct 72760 AACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGAT 72701 Query 110755 TTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTC 110814 || | |||| ||| || ||||| || || | | |||| ||| || | ||| | || Sbjct 72700 CTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTG 72641 Query 110815 CTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCAC 110872 ||| || | ||||| | | |||||||||| || || | || || || || |||| Sbjct 72640 CTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG-AGATCCGAGGGCTTGACATT-CCAC 72583 Query 110873 ATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCT 110932 |||||| |||| || | || || || | || |||||||| | || | |||| || Sbjct 72582 ATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCC 72523 Query 110933 TGGGCTTCAGCCA-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGAT 110991 | | | |||| | ||| | | |||| ||||| || ||||| || ||||| Sbjct 72522 TCCTCCTTGGCCAGCTGCACCG-ACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGAT 72464 Query 110992 ACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATA 111050 || | || || || || || || || || ||| | || Sbjct 72463 CTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATA-CGGAGAGCCAGGAAGG 72405 Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || ||||| || ||||| | ||| || || | ||| ||||| || || || | Sbjct 72404 CATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAG 72345 Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170 | || ||| || || || ||| |||| || ||| || || | ||| | || Sbjct 72344 CCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCT 72285 Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG------ACAT 111224 |||| || || || || | | || || || || | || ||| ||| Sbjct 72284 GGGTGACCTCGTGGAGCTTCTGGAAGTC----GT-AGACTC-CCTCGTTGTAGTCAACAA 72231 Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 | | || ||||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 72230 AGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACT 72171 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | ||| || || || | |||||| || || || || | ||||| ||||| |||| Sbjct 72170 CGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCT 72111 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | |||| |||||||||||||||||| |||| | || ||||| ||||| | | || Sbjct 72110 TGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGA 72051 Query 111405 GAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCC 111460 | || || | ||| | | || | | || |||| ||| | || | ||| | | Sbjct 72050 GGATGGCATACCAGAGCTTCTGAGCCT----TCATGGTCTTGCGACCCTTGCCCATCTGC 71995 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 111520 |||||||| ||| | ||| ||||||||||| || ||||| || || || || Sbjct 71994 TCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCA 71936 Query 111521 TT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 || || || || | |||| ||| | ||| | ||| |||| ||||||||| ||||| Sbjct 71935 TTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTC 71876 Query 111580 TGGAATCCACAGG--GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 111637 |||||||| ||| || |||| || || | ||| |||| || | || ||||| Sbjct 71875 GGGAATCCAGAGGGCGAGGAAA--AGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTC 71818 Query 111638 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 111697 || || || | ||| || | || ||| |||||||| |||||||| || | |||| | Sbjct 71817 TTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAA 71758 Query 111698 GATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 111753 | || | | | | ||| | || | || ||||| || ||| ||| || || || Sbjct 71757 GCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACG 71699 Query 111754 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGC 111813 ||||| || | | ||| | || ||| || || || |||| || |||| Sbjct 71698 GAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGC 71639 Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACAC 111871 | | |||| || | ||||| || || ||| ||| ||||| | ||||| | Sbjct 71638 GCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AG 71580 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || |||||||||| | || ||||||||||| || ||| ||||||||| Sbjct 71579 T-CTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAA 71521 Query 111932 CTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 ||||| ||| || || || ||||| || |||||||| || || | |||||| ||| Sbjct 71520 GAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA- 71463 Query 111991 CATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 | | |||| |||||| || ||| || || | ||| |||| ||| || || | Sbjct 71462 -AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAG 71404 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || | ||||| ||||||| ||||| ||| || Sbjct 71403 ATACCAACGGCGACACGCATGATCATGTGCTGGGG 71369 >seq1177 Length=83355 Score = 105 bits (116), Expect = 8e-18 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||||||||| || || || || || || |||||| ||||| ||||| ||||| Sbjct 26712 GTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 26771 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | | ||| | ||| ||||||||||||||| || Sbjct 26772 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 26831 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCAT 122846 || || |||| || || | |||||||||| ||||| |||| || ||| |||| Sbjct 26832 GGCGAAGGCAACGAGACGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTCAG 26888 Query 122847 TGCCCATTTCGCCTTCTT 122864 ||||| | |||||||| Sbjct 26889 GGCCCAGTCGGCCTTCTT 26906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019070391200