Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq132 127 2e-24
>seq132
Length=157463
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059
|| || || || ||||||||| | || || ||||| || || | || || | || ||
Sbjct 12651 GTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCGAC 12710
Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119
| ||||| ||| ||||| |||||||| ||||| || || || || ||||| || ||
Sbjct 12711 AATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTGATC 12770
Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179
| ||| ||||| || | || ||| | |||| | ||||||||||||||||| ||||||
Sbjct 12771 TTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAGGAG 12830
Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||| | || ||||| ||||| | || ||||| ||
Sbjct 12831 TCCACCCTCCACTTGGTGCTGCGTCTCCGTGGTGGTAT 12868
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||| || ||| | ||||| || || || || | ||
Sbjct 13095 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 13154
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | ||||| || ||||| ||||| || ||||| || ||||| ||
Sbjct 13155 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 13214
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | || || || || ||||| || || ||| | |||||||||
Sbjct 13215 CAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAAC 13274
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| | ||| | || | ||| |||| || ||
Sbjct 13275 ATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGG 13321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434909446117440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |