Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq132 167 5e-36
seq368 158 3e-33
seq996 120 7e-22
>seq132
Length=157463
Score = 167 bits (184), Expect = 5e-36
Identities = 172/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||||||||| || || ||||| || |||||||| || || | ||
Sbjct 13091 TCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAG 13032
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||||||||||||||| || ||||| || ||||| || ||||| || || |
Sbjct 13031 GGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGAT 12972
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||||||||| || || || ||||||||||| || ||| |||||
Sbjct 12971 ACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCTGACGATTCGACCTC 12912
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || ||||| || ||||| ||||| || || | ||||||
Sbjct 12911 AAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867
Score = 158 bits (174), Expect = 3e-33
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || |||||||| || || ||||| ||||| | ||||||| ||| ||
Sbjct 12850 AGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCC 12791
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||||||||||||||| | ||| || |||||||| |||| || || ||||||
Sbjct 12790 TCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCC 12731
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| || || || |||||||| ||||| |||||||| || ||||| |||
Sbjct 12730 TGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTC 12671
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || || || ||||| ||
Sbjct 12670 TTGCCGGTAAGCGTCTTGAC 12651
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||| |||||||| || |||||||| || || | |||||
Sbjct 12576 ACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 12517
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || |||||||| || ||||| || ||||| || |||||||| |||| ||
Sbjct 12516 GCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCC 12457
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||||||| || || || |||||||| || ||| || ||||| ||
Sbjct 12456 CTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAG 12397
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 12396 GGTGATGGTCTTGCCGGTGA 12377
Score = 149 bits (164), Expect = 1e-30
Identities = 170/226 (75%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948
|| ||| || | |||||||| ||||| || ||||| || |||||||| ||||| | |||
Sbjct 13319 TCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAA 13260
Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008
|| | | ||||| |||| |||||| || || |||||||| || || ||||| |||||||
Sbjct 13259 GG-TGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAA 13201
Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068
|| ||||||||||| ||||| || ||||| || || ||||| || || ||||
Sbjct 13200 TGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCT 13141
Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || || ||||||||||| || | ||||| || || | |||||
Sbjct 13140 CTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095
>seq368
Length=453445
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||| |||||||| || |||||||| || || | ||||| | || ||
Sbjct 426404 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 426463
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| ||||| || |||||||| || | || |||||||||
Sbjct 426464 TCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 426523
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 426524 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 426583
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| || || | ||||||
Sbjct 426584 TTACCCGTTAGGGTCTTGACGAAGATCTGCAT 426615
>seq996
Length=339164
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | || || || ||||||||||| ||||||||
Sbjct 161322 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 161381
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||| || ||||| || || | || ||||||||||||||||| || || || |||
Sbjct 161382 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 161441
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 161442 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 161500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159127539357155
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |