Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq555 86.0 5e-12
>seq555
Length=1693913
Score = 86.0 bits (94), Expect = 5e-12
Identities = 153/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|| || | ||| ||||| ||||| || || || ||||| || |||| | |||| ||
Sbjct 976626 AAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGA 976567
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
|| |||| | || || | || |||||| ||||||||||||| || ||| ||||
Sbjct 976566 CCAACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCG 976507
Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195
|| | |||| |||| ||||| |||||||||||||||||| | | ||||||
Sbjct 976506 CTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTCAGCGATGACGGC 976448
Query 30196 CTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30232
| || ||||| | ||| || || |||||||| |||
Sbjct 976447 --GCGAAGGAAGACGCGCTTCGTAGTAAGGAGGGGCAAC 976411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406155047162242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |