Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq132 138 3e-27 seq368 114 3e-20 seq996 84.2 5e-11 >seq132 Length=157463 Score = 138 bits (152), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || |||||||| || ||||||||||| || | | || | |||||| Sbjct 13078 AGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 13019 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || || | ||||||||| | | ||| || ||||| | Sbjct 13018 TCCAGCTGCTTT--CCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGT 12961 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | ||||||| || || ||||| ||||||| Sbjct 12960 CCTGGATCTTCGACTTGACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAG 12901 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||| ||||||| |||||| Sbjct 12900 TCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||||||||| || ||||| || |||||||||||||| || || | ||||| Sbjct 13306 AGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCC 13247 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || |||||||| | ||||||||| | | || || ||||| || Sbjct 13246 TCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 13187 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||| | || | |||| ||| ||| || || || ||||| || Sbjct 13186 TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTC 13127 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||| | ||||| Sbjct 13126 TTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || || ||||||||||||| | || | || || || | Sbjct 12845 CAAG-TGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAA 12787 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| | | ||||||||| | | || || || || || |||| Sbjct 12786 GCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAA 12727 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| |||||| | || | | | || ||| ||| || ||||| || || || |||| Sbjct 12726 TCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGC 12667 Query 152077 CCGTGAGAGTCTTCACGA 152094 | || || ||||| |||| Sbjct 12666 CGGTAAGCGTCTTGACGA 12649 >seq368 Length=453445 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| || ||||| || ||||||||||| |||| | || | || || Sbjct 426404 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 426463 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| || | ||||||||| | | ||| || ||||| | Sbjct 426464 TCGAGCTGCTTT--CCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGT 426521 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | |||| ||| ||| || ||||| || |||| Sbjct 426522 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAG 426581 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || ||||| ||||||| |||||| Sbjct 426582 TCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 426615 >seq996 Length=339164 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | || || || || || ||||||||||| Sbjct 161322 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 161381 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||| | | ||| || ||||| || || || || |||||| | || Sbjct 161382 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 161441 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| || ||| || ||||| ||||| || || ||||| || ||||||||||| Sbjct 161442 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 161500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153796451857137