Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq368 172 1e-37 seq132 163 6e-35 seq996 143 6e-29 seq849 86.0 1e-11 >seq368 Length=453445 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||| || || |||||||||||||| | Sbjct 426388 ACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 426447 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || |||||||||| || || |||||| || Sbjct 426448 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 426507 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 426508 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 426567 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 426568 CTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 426615 >seq132 Length=157463 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||| |||||||| ||||| || ||||| | ||| || || ||||||||||| ||| Sbjct 13322 ACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACT 13263 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||| |||||||| | || || || |||||||| | ||| || ||||| | Sbjct 13262 CAAG-GTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAG 13204 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||||||||| || ||||| | || ||| | || || |||||||||| |||| Sbjct 13203 GAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGA 13144 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || |||||||| || ||||| ||||| ||||| || ||||| Sbjct 13143 CCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| |||||||| || || || | || || || |||||||||||||||| Sbjct 13094 ACCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 13035 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || ||||| || |||| || || ||||| || Sbjct 13034 CAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGG 12975 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| ||||| || | |||||| Sbjct 12974 GATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCTGACGATTCGAC 12915 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | ||||| ||||| |||||||| Sbjct 12914 CTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || |||||||||||||| | Sbjct 12582 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 12523 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| || |||| || || |||||| || Sbjct 12522 CAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGG 12463 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||||| || || | ||||| || || || | ||||| Sbjct 12462 AATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGAC 12403 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 12402 CTCAAGGGTGATGGTCTTGCCGGT 12379 >seq996 Length=339164 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||| ||||| || || || ||||| |||||| Sbjct 161322 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 161381 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 161382 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 161441 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || || || ||||||||||||| ||||| ||||| Sbjct 161442 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 161500 >seq849 Length=904530 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/233 (68%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545 || |||||||| | | |||||||| || | ||| | ||||| || || || ||| | Sbjct 748216 CGACCCCACTTCAGGGCCTTGACAATGGAGTTGAAATTATCGTCCATGAGAATGATCGAG 748275 Query 312546 GCTGCTTCCTTTGCAATGTCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCC 312602 | |||||||| |||| || ||||| | | ||||| | | |||||||| || | Sbjct 748276 GACGCTTCCTTGGCAACTTCGGTACCGGCAATACCCATGGAGAAGCCGACGTCGGCCGTC 748335 Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662 || || || || || ||||| | || || || || || |||| || || ||||| Sbjct 748336 TTGAGCGCGGGAGCATCGTTGGTTCCGTCTCCGGTCACAGCAACGATGTCACCCTGGGCC 748395 Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAAC 312715 || | | ||| ||||| || ||| ||||| ||| || ||||||||||| Sbjct 748396 TTGAGGCGCTTCACCAAGATACGCTTGTCCTCGGGGCTGGAGCGGGCAAGAAC 748448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046717111513138