Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq132 150 4e-31 seq368 132 1e-25 seq996 122 2e-22 >seq132 Length=157463 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || || ||||| ||||| ||| |||||| Sbjct 12870 CAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCAGAC 12929 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 12930 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAG 12989 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||| ||||| |||||||| | || || | || || ||| || Sbjct 12990 CGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATC 13049 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 13050 CAGAAGGAGTCTACCCTGCACCTTGT 13075 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || ||||| ||||| || || ||||| || || ||| Sbjct 13098 CAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCGGAC 13157 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || || ||||| |||||||| Sbjct 13158 ACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 13217 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||| || || || ||| | || ||||| | || |||| ||||| ||| | Sbjct 13218 CGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCAC-CTTGAGTGATTACAACAT 13276 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || |||||||| Sbjct 13277 CCAGAAGGAGTCGACGCTTCATCTTGT 13303 Score = 129 bits (142), Expect = 1e-24 Identities = 148/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || |||||||| ||||| || || || ||||||| Sbjct 12649 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 12708 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| |||||||||||||||||| || || || || |||||||| || | | Sbjct 12709 ACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTGA 12768 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || ||||| || || ||| |||| || ||||||| ||| | || || | Sbjct 12769 TCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAGG 12828 Query 178111 AATCAACACTGCATCTTG 178128 | || || || || |||| Sbjct 12829 AGTCCACCCTCCA-CTTG 12845 Score = 122 bits (134), Expect = 2e-22 Identities = 141/189 (75%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || ||| || |||||||| || ||||| Sbjct 12377 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 12436 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||| |||||||| || || || || || |||||||| || || || |||||||||| Sbjct 12437 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 12496 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || || || | || || |||| || ||| |||| || || || || || | Sbjct 12497 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 12556 Query 178123 ATCTTGTTT 178131 | |||| || Sbjct 12557 A-CTTGGTT 12564 >seq368 Length=453445 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 426612 CAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 426553 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 426552 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 426493 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| || || | || || |||| || ||| || Sbjct 426492 CGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 426433 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 426432 CAGAAGGAGTCCACCCTTCA-CTTG 426409 >seq996 Length=339164 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || || ||||| ||||| || ||| ||||| || Sbjct 161501 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 161442 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| || |||||||| || | Sbjct 161441 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 161382 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| || || | || || |||| || ||| |||| || Sbjct 161381 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 161322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203705798638518