Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq368 158 1e-33 seq996 141 9e-29 seq132 127 2e-24 seq829 87.8 2e-12 >seq368 Length=453445 Score = 158 bits (174), Expect = 1e-33 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| ||||||||| Sbjct 426389 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 426448 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| || || || ||||||||||| ||||| | ||| Sbjct 426449 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 426508 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 426509 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 426566 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || |||||||| || ||||| ||||| ||||||||| Sbjct 426567 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 426616 >seq996 Length=339164 Score = 141 bits (156), Expect = 9e-29 Identities = 143/184 (78%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| | Sbjct 161320 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 161379 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 161380 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 161439 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || ||||||||||| ||||| || Sbjct 161440 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 161497 Query 41851 GAAA 41854 |||| Sbjct 161498 GAAA 161501 >seq132 Length=157463 Score = 127 bits (140), Expect = 2e-24 Identities = 163/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||||||||| || ||||| Sbjct 12865 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 12806 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| ||||| |||| |||||| ||||| | |||| Sbjct 12805 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 12746 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||| |||||| ||| | |||| ||| || | || | || || ||||| Sbjct 12745 ATGCCCTCTTTGTCC-TGAATCTTTGACTTGACATTGTCG--ATGGTATCAGAAGACTCA 12689 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||||| | || || || || || || |||||||| |||| Sbjct 12688 ACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 12649 Score = 125 bits (138), Expect = 7e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| |||||||| Sbjct 12581 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 12522 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| |||||||| ||||||||||| ||||| | |||| Sbjct 12521 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 12462 Query 41756 ACGCTCTCCTTGTCCATGATTTTT 41779 | || |||||||||| ||| ||| Sbjct 12461 ATGCCCTCCTTGTCCTGGATCTTT 12438 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| || ||||||||| ||||| ||||| || Sbjct 13093 CCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 13034 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| |||||||| ||||||||||| ||||| | ||| Sbjct 13033 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 12974 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| || | || | ||||| ||| || | Sbjct 12973 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG--ATGGTGTCTGACGATTCGA 12916 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| |||||||| Sbjct 12915 CCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867 >seq829 Length=372779 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || || || || || ||||| ||||| |||| || |||||| ||||||||| ||| Sbjct 201650 CGCATTGCCCCCCGCTCCGGTCTCGCTGCCAAGAACTTCATCGACACGGGCGCCGGTGTC 201709 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||| ||||||||||| | |||| || | ||||||||||||| ||| Sbjct 201710 ATCGACGCTGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 201762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294482316400