Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq131 192 7e-44 >seq131 Length=561545 Score = 192 bits (212), Expect = 7e-44 Identities = 418/628 (67%), Gaps = 56/628 (9%) Strand=Plus/Minus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG 145749 || ||||||| |||||| || || || |||| |||||| | ||| || || || Sbjct 345406 TCAACGTGGTCAGCGTAGACATGTGCATCGCCCATGACGTGCGTCAAGCTGCCAGGGACG 345347 Query 145750 AGGCC-CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| | | || | |||| | ||||| |||||||| | |||||| || ||||||||||| Sbjct 345346 AGGTCACATGCGC-GGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGG 345288 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC------ 145862 ||| || || ||||| || | || |||||||||||||| ||| || | ||| Sbjct 345287 CACGCCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGG 345228 Query 145863 ----------------------------GCCCGCC--------ACGTAGAACTG-GCACA 145885 || ||| ||||||||||| ||| | Sbjct 345227 CTTCTCTCCGTCAGCGGGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTGCGCAAA 345168 Query 145886 GGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945 | |||||| ||||| |||||||| |||||||| |||||||| ||| |||||| Sbjct 345167 C-ATGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGA 345109 Query 145946 CGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGT 146002 || | | || ||| || ||| |||| | || || | || |||||||| Sbjct 345108 GGA---TGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGT 345052 Query 146003 CCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCC 146062 | |||||||| ||| |||||| ||||||| ||| || ||| |||| || ||||| | || Sbjct 345051 CGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCC 344992 Query 146063 ACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGG 146122 | ||||| |||||||| || || ||||| || || | |||| || || | | | Sbjct 344991 ATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGT 344932 Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTC 146180 ||||||| || || || |||||| ||||||||||||||||||| |||||| || | | Sbjct 344931 CGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTG--C 344874 Query 146181 ATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAA 146240 |||| ||| ||| || |||||| |||||||| ||| ||| | | ||| Sbjct 344873 GAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTCAGCGATGACGGCGCGAAGGAA 344814 Query 146241 GACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 ||| | ||| || || || ||||| ||| Sbjct 344813 GACGCGCTTCGTAGTAAGGAGGGGCAAC 344786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590073289043040