Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq131 192 7e-44
>seq131
Length=561545
Score = 192 bits (212), Expect = 7e-44
Identities = 418/628 (67%), Gaps = 56/628 (9%)
Strand=Plus/Minus
Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG 145749
|| ||||||| |||||| || || || |||| |||||| | ||| || || ||
Sbjct 345406 TCAACGTGGTCAGCGTAGACATGTGCATCGCCCATGACGTGCGTCAAGCTGCCAGGGACG 345347
Query 145750 AGGCC-CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808
||| | | || | |||| | ||||| |||||||| | |||||| || |||||||||||
Sbjct 345346 AGGTCACATGCGC-GGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGG 345288
Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC------ 145862
||| || || ||||| || | || |||||||||||||| ||| || | |||
Sbjct 345287 CACGCCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGG 345228
Query 145863 ----------------------------GCCCGCC--------ACGTAGAACTG-GCACA 145885
|| ||| ||||||||||| ||| |
Sbjct 345227 CTTCTCTCCGTCAGCGGGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTGCGCAAA 345168
Query 145886 GGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945
| |||||| ||||| |||||||| |||||||| |||||||| ||| ||||||
Sbjct 345167 C-ATGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGA 345109
Query 145946 CGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGT 146002
|| | | || ||| || ||| |||| | || || | || ||||||||
Sbjct 345108 GGA---TGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGT 345052
Query 146003 CCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCC 146062
| |||||||| ||| |||||| ||||||| ||| || ||| |||| || ||||| | ||
Sbjct 345051 CGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCC 344992
Query 146063 ACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGG 146122
| ||||| |||||||| || || ||||| || || | |||| || || | | |
Sbjct 344991 ATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGT 344932
Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTC 146180
||||||| || || || |||||| ||||||||||||||||||| |||||| || | |
Sbjct 344931 CGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTG--C 344874
Query 146181 ATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAA 146240
|||| ||| ||| || |||||| |||||||| ||| ||| | | |||
Sbjct 344873 GAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTCAGCGATGACGGCGCGAAGGAA 344814
Query 146241 GACCCTCTTGGTGGTCAGCAGGGGGAAC 146268
||| | ||| || || || ||||| |||
Sbjct 344813 GACGCGCTTCGTAGTAAGGAGGGGCAAC 344786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590073289043040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |