Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq341 122 8e-23
seq213 109 5e-19
seq207 91.5 1e-13
>seq341
Length=430742
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || ||||||||||| |||| ||||| |||||| | ||| || |||
Sbjct 392232 GTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCA 392291
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| ||||||||||| |||||||| |||||||||||||| ||| || ||
Sbjct 392292 GCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 392351
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||||| ||||||||| | || | ||| || || |||| ||
Sbjct 392352 ACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTC 392411
Query 118722 TTTACAAAAATCTGCAT 118738
|| || ||||| |||||
Sbjct 392412 TTGACGAAAATTTGCAT 392428
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | || ||||||||||| || ||||| || |||||||||||||||
Sbjct 392656 TACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGG 392715
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| || || ||||| ||||| || || ||| |||| | |||||||| || || |
Sbjct 392716 ACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGG 392775
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| |||||||||||||| ||| ||| || || | |||| ||| || | ||| |
Sbjct 392776 GAATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAA 392835
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726
|||| | ||| | || |||||||| || || || ||
Sbjct 392836 CCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 392872
Score = 104 bits (114), Expect = 2e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| || ||||| |||||
Sbjct 392960 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 393019
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| | || || |||||||| || || || ||||||||||||||
Sbjct 393020 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 393079
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| ||| || || | |||| ||| || | | ||||||||| | ||| | || |||
Sbjct 393080 ATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTG 393139
Query 118710 CCGGT 118714
|||||
Sbjct 393140 CCGGT 393144
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| || || ||||| ||| || ||||| |||||
Sbjct 392460 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCG 392519
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || || |||||||| ||||| || || ||||||||||| || || ||
Sbjct 392520 GCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTG 392579
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||| | |||||||| | ||| | || ||||| || || ||
Sbjct 392580 ACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTC 392639
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 392640 TTGACGAAGATCTGCAT 392656
>seq213
Length=714089
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| | ||||| ||||||
Sbjct 265270 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 265211
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| |||||||| |||| || |||||||| || || || ||||||||||||||
Sbjct 265210 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 265151
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | || ||
Sbjct 265150 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 265091
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || || || |||||||||
Sbjct 265090 CCCGTTAGGGTCTTGACGAAGATCTGCATG 265061
>seq207
Length=219550
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| ||||||||||| || || ||| ||||
Sbjct 185373 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 185314
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| ||||| || |||||||||||||| || || || || | |||
Sbjct 185313 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 185254
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||||| | ||||||||| | ||| | || || || ||||| || || || |||
Sbjct 185253 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 185194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827883241392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |