Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq341 120 2e-22
seq213 104 2e-17
seq207 98.7 6e-16
>seq341
Length=430742
Score = 120 bits (132), Expect = 2e-22
Identities = 128/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||||||||| ||| |||| || | |||||| || ||||||
Sbjct 392978 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAA 393037
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || ||||||||||| ||| | || ||||||||| |||||| ||| | || |
Sbjct 393038 ATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTG 393097
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367
| || | ||||| || ||||| || | |||||||| ||||||||||
Sbjct 393098 TCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGA 393146
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | ||| || ||||| ||||||||||| ||||| || | ||
Sbjct 392445 AGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 392504
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||| || |||||||| || |||||||||||| ||| | | |||||||||
Sbjct 392505 TCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 392564
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | || | ||||||||| || | || || ||
Sbjct 392565 TGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 392624
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| ||||| || || || |||||||||||
Sbjct 392625 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 392656
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | |||||||| ||| | || || ||||| |||||||| ||||||
Sbjct 392658 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 392717
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| || | ||||||||||||||| || | ||||||||||| |||
Sbjct 392718 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 392777
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| |||||| ||| | || | | || | ||| | || || ||
Sbjct 392778 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACC 392837
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
|| | |||||||| |||||||| || || || ||
Sbjct 392838 TCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 392872
>seq213
Length=714089
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| |||| ||| | || || ||||| ||||||||||||||
Sbjct 265288 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 265229
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | |||||| || || || || || ||||||||||| |||
Sbjct 265228 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 265169
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | |||| || || ||
Sbjct 265168 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 265109
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || || || || || || || || |||||||||||
Sbjct 265108 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 265062
>seq207
Length=219550
Score = 98.7 bits (108), Expect = 6e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| |||| || | ||||||||| ||||| ||
Sbjct 185373 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 185314
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
| |||||||||||| ||| | || ||||||||| ||||| ||| | || | |
Sbjct 185313 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 185254
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|||| || | || ||||| || | || ||||| || || || || || ||||| ||
Sbjct 185253 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 185195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323070125778560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |