Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq188 118 2e-21 seq406 93.3 9e-14 >seq188 Length=580545 Score = 118 bits (130), Expect = 2e-21 Identities = 378/581 (65%), Gaps = 13/581 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || |||||| ||| || |||||||| |||| |||||||| | || || Sbjct 491420 TTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAGACCC 491479 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || || || || || ||| | ||| |||| || Sbjct 491480 CAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATC 491539 Query 248953 GAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 || || |||| | ||| | | | | | | || || ||| | || || |||||||| Sbjct 491540 GAAACCTACAACCTGATGTCGAGCAAGTTCT-TCACTCACGCCTCTCCCACACTCTTCAA 491598 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 |||||||||| | |||||| ||| ||||| || | | |||| | || ||||| Sbjct 491599 CGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTC 491658 Query 249072 TGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCG 249130 | | || || || |||||||| || || || | || | ||| || || | || || | Sbjct 491659 TATTGAGGGTATCTATGACACCCTCAAGACTTGC-GCCATGATCTCCAAGATGGCCGGTG 491717 Query 249131 GAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATG 249190 | || |||||| |||| | |||||| || | || || || || || || || | Sbjct 491718 GCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACG 491777 Query 249191 GGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCA 249250 | | | ||| |||| || | || || ||| | ||| || | | | || Sbjct 491778 GTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCG 491837 Query 249251 ACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACG 249304 |||||| || ||||| || | |||||||| || | || ||||||| Sbjct 491838 ACCAGGGTGGCAACAAGCGCC---CCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACG 491894 Query 249305 CCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGC 249364 ||||| | || || ||| |||| ||| |||||| ||||||| ||| | | || | Sbjct 491895 CCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCC 491954 Query 249365 GTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||||||| ||| || ||| ||| | ||||| | |||||| Sbjct 491955 GTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATG 491995 >seq406 Length=951903 Score = 93.3 bits (102), Expect = 9e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260 ||||||||| || ||| || | ||||| |||||||| || | ||||| |||||||| Sbjct 555238 CTGTCCGCCCTTTAAGATCATCATCCTCGACGAGGCCGATTCGATGACCCAGGACGCGCA 555297 Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320 | ||||||||| || || |||||||| || | | || || || ||||| | || Sbjct 555298 GAGCGCCCTCCGTCGGACCATGGAGACATACAGCAAGATTACACGGTTCTGCCTCATCTG 555357 Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||||||||| || ||||| | ||| || || || ||| ||||||||| |||| Sbjct 555358 CAACTACGTCACGCGCATCATTGACCCTCTTGCCAGCCGTTGCAGCAAGTTTCGCTTCA 555416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073759851367168