Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq188 118 2e-21
seq406 93.3 9e-14
>seq188
Length=580545
Score = 118 bits (130), Expect = 2e-21
Identities = 378/581 (65%), Gaps = 13/581 (2%)
Strand=Plus/Plus
Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892
||||| || |||||| ||| || |||||||| |||| |||||||| | || ||
Sbjct 491420 TTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAGACCC 491479
Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952
||||||||| | ||||| || || || || || || ||| | ||| |||| ||
Sbjct 491480 CAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATC 491539
Query 248953 GAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011
|| || |||| | ||| | | | | | | || || ||| | || || ||||||||
Sbjct 491540 GAAACCTACAACCTGATGTCGAGCAAGTTCT-TCACTCACGCCTCTCCCACACTCTTCAA 491598
Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071
|||||||||| | |||||| ||| ||||| || | | |||| | || |||||
Sbjct 491599 CGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTC 491658
Query 249072 TGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCG 249130
| | || || || |||||||| || || || | || | ||| || || | || || |
Sbjct 491659 TATTGAGGGTATCTATGACACCCTCAAGACTTGC-GCCATGATCTCCAAGATGGCCGGTG 491717
Query 249131 GAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATG 249190
| || |||||| |||| | |||||| || | || || || || || || || |
Sbjct 491718 GCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACG 491777
Query 249191 GGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCA 249250
| | | ||| |||| || | || || ||| | ||| || | | | ||
Sbjct 491778 GTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCG 491837
Query 249251 ACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACG 249304
|||||| || ||||| || | |||||||| || | || |||||||
Sbjct 491838 ACCAGGGTGGCAACAAGCGCC---CCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACG 491894
Query 249305 CCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGC 249364
||||| | || || ||| |||| ||| |||||| ||||||| ||| | | || |
Sbjct 491895 CCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCC 491954
Query 249365 GTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405
||||||| ||| || ||| ||| | ||||| | ||||||
Sbjct 491955 GTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATG 491995
>seq406
Length=951903
Score = 93.3 bits (102), Expect = 9e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260
||||||||| || ||| || | ||||| |||||||| || | ||||| ||||||||
Sbjct 555238 CTGTCCGCCCTTTAAGATCATCATCCTCGACGAGGCCGATTCGATGACCCAGGACGCGCA 555297
Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320
| ||||||||| || || |||||||| || | | || || || ||||| | ||
Sbjct 555298 GAGCGCCCTCCGTCGGACCATGGAGACATACAGCAAGATTACACGGTTCTGCCTCATCTG 555357
Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
||||||||| || ||||| | ||| || || || ||| ||||||||| ||||
Sbjct 555358 CAACTACGTCACGCGCATCATTGACCCTCTTGCCAGCCGTTGCAGCAAGTTTCGCTTCA 555416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073759851367168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |