Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq188 484 6e-132 seq463 140 3e-28 seq341 127 2e-24 seq213 89.7 5e-13 >seq188 Length=580545 Score = 484 bits (536), Expect = 6e-132 Identities = 1221/1844 (66%), Gaps = 30/1844 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || ||||||||||||||||| || | |||||| || ||||| || Sbjct 493203 GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTG 493144 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | |||| |||||| ||| ||||| Sbjct 493143 GTTATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATG 493084 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | | | |||||| ||| || ||||| || ||| Sbjct 493083 AAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTC 493024 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 |||||||| | ||| ||| || || ||| |||||| ||| ||||| | | Sbjct 493023 TTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTGGATGGAACCGTTCTCG 492964 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | |||| ||||| ||| ||| || | ||| || | Sbjct 492963 GCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAG 492904 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGA 22503 || | |||| || || || ||||| || | ||||| | || || ||||| |||||||| Sbjct 492903 AGCCAAGGGTTGACAACCTGGAACTCACCAG-CAAGAACACGACGCTGGTAGATGTTGGA 492845 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 ||| | || || || | || ||||| |||| ||||| | ||| || |||||||| Sbjct 492844 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCAT 492785 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATC 22621 ||||| | || || ||||| | | ||||||| ||| | ||| | ||||| Sbjct 492784 GGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATC 492725 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 ||||||||| ||||| || ||| | ||||| |||||| || || || | | ||| Sbjct 492724 --CCAGTCCCAGAGATCCGAGGGCTTGACATT---CCACATGTCATACTGGAGGATGCCC 492670 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAG 22741 || | ||| || |||||||| | ||| || || | | ||| || | ||| Sbjct 492669 TGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCAC 492611 Query 22742 CT-CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GC 22797 | | | || ||| || || ||||||||||| |||||||| | ||| || Sbjct 492610 CGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGC 492551 Query 22798 GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAAC 22857 ||| || || || | |||||||| | || ||| || || || | |||||| || Sbjct 492550 CTCGG-GAGACT--CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGAC 492494 Query 22858 GCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGAT 22913 || | |||||| || |||| || || || |||| ||| | | ||| | Sbjct 492493 ACCGAGACCGATGGGGCGGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGAACAGGGT 492438 Query 22914 ACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNN 22973 | || ||||| ||||||||| ||| | | || | | || | Sbjct 492437 AGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGA 492378 Query 22974 NNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGG 23030 | |||||||| || ||| ||||| ||||||| || | ||||| ||||| Sbjct 492377 GCTTCTGGAAGTCGTAGACTCCCTCGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGG 492318 Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 | || ||||| || || ||||| || | |||||| | ||| || || || || | Sbjct 492317 CCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGT 492258 Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 || | || ||||| | || |||||||||| || || ||| | |||||||| Sbjct 492257 TGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 492198 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCT 23210 |||||||| | || | || |||||| ||| | ||||| ||| || ||| | ||| Sbjct 492197 AGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 492138 Query 23211 GAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCA 23269 |||| | | ||| || ||| ||| | ||||||||| | |||||| || ||| Sbjct 492137 GAGCCTTCATG-GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCA 492079 Query 23270 AATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCAC 23329 || || | ||||| |||||||||||||| || ||| | || ||||||||| |||| Sbjct 492078 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAG 492019 Query 23330 ATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGT 23389 | || || || | |||| || || || || ||||| || ||| ||| || Sbjct 492018 TCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG 491959 Query 23390 TCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACG 23449 || |||||||| |||||||| |||||| |||||| ||||||||| ||||| || || Sbjct 491958 TCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACA 491899 Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || || ||||| ||||| ||||||| ||| || || || || | ||| ||||| ||||| Sbjct 491898 TCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGG 491839 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569 |||||||| || || ||||||||| | || | ||||| || |||| ||||||||| | Sbjct 491838 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTA 491779 Query 23570 CCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 ||| ||| || | | || || | || || | | ||| |||| || ||| ||| Sbjct 491778 CCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATG 491719 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 || ||| || || || ||||| ||||| || || ||||| ||||| ||||| || Sbjct 491718 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCAATA 491659 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 |||||| || | |||| | ||| || || |||| || || | || ||| |||| Sbjct 491658 GAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCG 491599 Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCG 23809 ||| ||||| || |||||| || ||| | ||||||| || ||||| || ||| Sbjct 491598 TTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTTTCG 491539 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 ||| || |||| ||| || || ||||| | |||||| ||||| ||||||| || Sbjct 491538 ATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGG 491479 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 ||||||||| | | ||||| || |||| || ||||| | | || || || || Sbjct 491478 GGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAG 491419 Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || | ||||| ||||| || || | || ||||| || Sbjct 491418 CCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGA 491375 >seq463 Length=83378 Score = 140 bits (154), Expect = 3e-28 Identities = 268/390 (69%), Gaps = 10/390 (3%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | | || ||||| | | | | || | |||||| || | Sbjct 56445 CAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCG 56504 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || | || ||||||||||| || ||||| ||||| || ||| || | || || Sbjct 56505 TCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 56564 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || || |||||||| ||||| || ||||||| |||| || || Sbjct 56565 CTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCG 56624 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 || |||||||| || || || || || ||||| | ||||||||| |||| |||| Sbjct 56625 TGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCAC---CTCAA-GAACC 56680 Query 58154 GACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | ||| || | |||||| ||| ||| || ||| ||| || | ||| Sbjct 56681 GCCCCAGCA-AGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAGATTGAGCAGGAG 56739 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| || || || || ||||||| |||||| | ||||| || Sbjct 56740 TTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 56799 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTG 58298 ||||||||||||||||||||| | || ||| Sbjct 56800 TACATTGAGTTTGTTGCCGACCGCCTCTTG 56829 >seq341 Length=430742 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || ||||| || | || || || | || Sbjct 392428 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 392369 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| ||| | || ||||||||| Sbjct 392368 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 392309 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || |||||||| || | || |||| ||||| ||| Sbjct 392308 CAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAAC 392249 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| |||||||| || ||| | ||| | || ||| Sbjct 392248 ATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGGT 392201 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || || ||| |||| Sbjct 392656 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 392597 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | || ||||||||| Sbjct 392596 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 392537 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| ||||||| | || || || || ||| Sbjct 392536 CAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 392477 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || || || ||| | || | || |||| Sbjct 392476 ATCCAGAAGGAGTCTACCCTGCACCTTGTCCTTCGCCTCCGTGGAGGTA 392428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || |||||| | || ||||| | || || | ||| Sbjct 392874 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 392815 Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | ||||| || ||| | ||||||||| ||| | || || ||||||||||| | Sbjct 392814 ACAATGTCAAGTCAAAGATTCA-GGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCTTG 392756 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||| ||||| ||| | || ||| ||| || |||||| |||||||| || Sbjct 392755 ATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAG 392696 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 || || || || || |||| || Sbjct 392695 GAGTCCACCCTCCACTTGGTGCT 392673 >seq213 Length=714089 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 265057 CAATCATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGT 265116 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | || || | Sbjct 265117 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 265176 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || || ||||| || ||| | || ||| || | ||| | Sbjct 265177 ACCAGCAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 265236 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || ||||| |||| || | ||| | || |||| Sbjct 265237 ACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGGTA 265290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763747689920