Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq188 176 7e-39
seq463 122 1e-22
>seq188
Length=580545
Score = 176 bits (194), Expect = 7e-39
Identities = 347/508 (68%), Gaps = 4/508 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | ||| | ||| | || ||||||||||| ||
Sbjct 491840 CAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGAT 491899
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || ||||| | || ||||||| ||| ||| || |||| || ||| | |||
Sbjct 491900 GTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAC 491959
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || || | ||||||||| | || | | ||| ||
Sbjct 491960 CTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGAC 492019
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || | || || ||| |||| |||| ||||| ||||||
Sbjct 492020 TGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTT 492079
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | |||||||| |||| | || |||| | | | || |
Sbjct 492080 GAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA-TGAAGGCTC- 492137
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | |||||| | ||| ||| |||||||| | || | ||| ||||
Sbjct 492138 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 492197
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| ||| || ||||| |||||||| || | ||||| ||| ||||||
Sbjct 492198 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCGCAGCTCCA 492257
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353
| || |||||||| ||| | |||||| | | || || ||| || || ||| ||||
Sbjct 492258 ACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAACCTGG 492317
Query 97354 CATCGGTCAATCTGCCCAAGTTTGTAGA 97381
| ||| || ||||||| ||||| ||
Sbjct 492318 CCTCGCTCGCCCTGCCCACCTTTGTTGA 492345
>seq463
Length=83378
Score = 122 bits (134), Expect = 1e-22
Identities = 309/467 (66%), Gaps = 31/467 (7%)
Strand=Plus/Plus
Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459
|| || ||||| || | |||| | | || || || ||||||||||| ||||| ||||||
Sbjct 56479 GATGAGAAGTCCTCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTC 56538
Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519
|| ||| || || ||||||| |||||||||||||| || || |||||||| |||
Sbjct 56539 TTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTG 56598
Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579
|| | |||||| | || ||||| || ||||| || ||| ||||| ||| ||
Sbjct 56599 ACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTC 56658
Query 125580 CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------C 125633
|| | ||| | | | | || | | ||||| | ||||||| |
Sbjct 56659 CT------CTACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGTCATTGAGGAC 56706
Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693
| ||| || |||||| || | ||| || || ||||| || ||||| | || || |
Sbjct 56707 ATCATCGT---CGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGC 56763
Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753
|| | |||||||||| ||| || ||| ||||||| |||||||| || || ||
Sbjct 56764 GCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGC 56823
Query 125754 CTACTGTACGAGTTG--ATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808
|| || |||| | ||| |||| | ||||| | || |||||||| |
Sbjct 56824 CTCTTG-----GTTGCTCTCGGCAATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACT 56878
Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
||||| | ||| || || | || ||||||||||| || ||||||
Sbjct 56879 TCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 56925
Score = 102 bits (112), Expect = 1e-16
Identities = 197/289 (68%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| |||||| ||||||| || ||||| | ||| ||| | ||||||
Sbjct 56038 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 56097
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | | | | || |||| | || || |||
Sbjct 56098 TCCAAGGATCTCCACGACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTCATCTCG 56157
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||||| | |||||||| |||| || || || || ||||| || || || | ||
Sbjct 56158 CACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGCGC 56217
Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256
||| ||| | ||| | || |||| ||||| || || |||||||||||||
Sbjct 56218 TTCAGCGGCGAG--GTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGA 56275
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
| |||||| | ||||| || | ||||| || || |||| |||||
Sbjct 56276 TGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTACAT 56324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741054790697760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |