Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq188 176 7e-39 seq463 122 1e-22 >seq188 Length=580545 Score = 176 bits (194), Expect = 7e-39 Identities = 347/508 (68%), Gaps = 4/508 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| | ||| | || ||||||||||| || Sbjct 491840 CAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGAT 491899 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| | || ||||||| ||| ||| || |||| || ||| | ||| Sbjct 491900 GTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAC 491959 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || || | ||||||||| | || | | ||| || Sbjct 491960 CTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGAC 492019 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || | || || ||| |||| |||| ||||| |||||| Sbjct 492020 TGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTT 492079 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | |||||||| |||| | || |||| | | | || | Sbjct 492080 GAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA-TGAAGGCTC- 492137 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||| ||| |||||||| | || | ||| |||| Sbjct 492138 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 492197 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| ||| || ||||| |||||||| || | ||||| ||| |||||| Sbjct 492198 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCGCAGCTCCA 492257 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || |||||||| ||| | |||||| | | || || ||| || || ||| |||| Sbjct 492258 ACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAACCTGG 492317 Query 97354 CATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | ||| || ||||||| ||||| || Sbjct 492318 CCTCGCTCGCCCTGCCCACCTTTGTTGA 492345 >seq463 Length=83378 Score = 122 bits (134), Expect = 1e-22 Identities = 309/467 (66%), Gaps = 31/467 (7%) Strand=Plus/Plus Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 || || ||||| || | |||| | | || || || ||||||||||| ||||| |||||| Sbjct 56479 GATGAGAAGTCCTCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTC 56538 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || ||| || || ||||||| |||||||||||||| || || |||||||| ||| Sbjct 56539 TTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTG 56598 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || | |||||| | || ||||| || ||||| || ||| ||||| ||| || Sbjct 56599 ACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTC 56658 Query 125580 CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------C 125633 || | ||| | | | | || | | ||||| | ||||||| | Sbjct 56659 CT------CTACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGTCATTGAGGAC 56706 Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693 | ||| || |||||| || | ||| || || ||||| || ||||| | || || | Sbjct 56707 ATCATCGT---CGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGC 56763 Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753 || | |||||||||| ||| || ||| ||||||| |||||||| || || || Sbjct 56764 GCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGC 56823 Query 125754 CTACTGTACGAGTTG--ATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808 || || |||| | ||| |||| | ||||| | || |||||||| | Sbjct 56824 CTCTTG-----GTTGCTCTCGGCAATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACT 56878 Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||||| | ||| || || | || ||||||||||| || |||||| Sbjct 56879 TCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 56925 Score = 102 bits (112), Expect = 1e-16 Identities = 197/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||| | ||| ||| | |||||| Sbjct 56038 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 56097 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | | | | || |||| | || || ||| Sbjct 56098 TCCAAGGATCTCCACGACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTCATCTCG 56157 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | |||||||| |||| || || || || ||||| || || || | || Sbjct 56158 CACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGCGC 56217 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | ||| | || |||| ||||| || || ||||||||||||| Sbjct 56218 TTCAGCGGCGAG--GTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGA 56275 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 56276 TGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTACAT 56324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054790697760