Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq154 93.3 4e-14 >seq154 Length=210998 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAG 99603 ||||| || || | || ||||| || || ||||||||| |||||||| |||| | Sbjct 130430 CGCACCGTCAGGCACGTATTGAGGAGGAGGACGCCGCGGTCCGCCCAGGGGGTCAGGAGG 130489 Query 99604 CCG----TGCTGCGGCCGCGGGGTCCCG---GGGAAGTTCTTCTGCACGGCCGCGTAGAT 99656 ||| || || || |||||| | ||| ||| ||||| | ||| |||| || Sbjct 130490 CCGCCTTTGTTG-GGAGGCGGGGAGAAGTTCGGGTAGTCCTTCTTGAGGGCGACGTACAT 130548 Query 99657 GTTCTGGAGGCTGGGCGGGATCGGAA-CGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGG 99715 ||| | ||| |||||| ||| || | || ||| |||||| |||||||||| Sbjct 130549 GTTTTTGAGCGAGGGCGGTGCCGGGGTCGGAG-GGCGGACGGAGAAGGCGAGGCCGTGGG 130607 Query 99716 CCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 |||| |||| |||||||||| || || || ||||||||||||||||| Sbjct 130608 CCTGGTTGTGGTTGTGGTAGGGATCTTGACCGAGGATGACGACCTTGAC 130656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440896576649760