Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq188 370 3e-97 seq463 91.5 4e-13 >seq188 Length=580545 Score = 370 bits (410), Expect = 3e-97 Identities = 1127/1722 (65%), Gaps = 32/1722 (2%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||| | |||||||| || |||||||| | || ||||| || Sbjct 491477 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 491536 Query 363514 ATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACAATGTA 363572 || ||||| || || || | | || || | ||||| |||||| | || ||| | | Sbjct 491537 ATCGAAACCTACAACCTGATGTCGAGCAAGT-TCTTCACTCACGCCTCTCCCACACTCTT 491595 Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632 ||| || || || | | | | ||| |||| |||||||| || | | |||||||| || Sbjct 491596 CAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGA 491655 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 || || |||||||||| |||||| || |||| ||| || | || ||||||| || || Sbjct 491656 CTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGG 491715 Query 363693 CGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACA 363750 || |||||| | | || ||||| | || || || | | || ||| |||||| Sbjct 491716 TGGCATTGGTCTCAACG-TCCACCGCATCCGCGCCACCGG-CTCATATATTGCCGGCACG 491773 Query 363751 GGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810 || ||| || || | || || ||||| ||||| || |||| ||||| | ||| Sbjct 491774 AACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTAC 491833 Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870 |||||||||||||| |||||| || || || || || || || |||||| || Sbjct 491834 GTCGACCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 491893 Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930 |||||| | || || || | || | || || ||| || || ||||| | || || Sbjct 491894 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 491953 Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT 363990 ||||| || ||| || || ||| || | |||| || |||||| | |||||| | Sbjct 491954 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 492013 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 | | ||| | ||| | ||||| ||||||| || || || |||| | || || Sbjct 492014 GGGGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAG 492073 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110 || | || || | ||||| ||||| || | ||| |||| ||| ||||| || Sbjct 492074 GAGTTTGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATGAAG 492133 Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || |||||||| |||| ||||||| | || | |||| ||||| || | |||| ||| Sbjct 492134 GCTCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATG 492193 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||| | |||||||||| ||||||| || ||||||| || | || |||| Sbjct 492194 CTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTA-TCCGCAG 492252 Query 364231 -AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 |||||| || || |||||||| || ||| ||| || || ||| || || || || Sbjct 492253 CTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAA 492312 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTTGACCACCA 364343 ||| || ||| |||| || || | ||||| || || || | ||| ||| Sbjct 492313 CCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTCTACGACTTCCA 492372 Query 364344 GCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401 | | || | || || ||| | || | | | |||| || ||| | |||||| Sbjct 492373 GAAGCTCCACGAGGTCACCCAGGTCGTTGTCC--GCAACCTGAACAGAATCATCGACGTC 492430 Query 364402 AATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCGATTG 364456 || | || || ||| || || || ||| || ||||| || ||||| || | Sbjct 492431 AACCACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACATGCGCCACCGCCCCATCG 492485 Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGC 364516 |||| ||||| ||||| || ||||| | || || ||| ||| | || || || | Sbjct 492486 GTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCTC 492545 Query 364517 CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTG 364576 | || ||||| | || || ||| ||||||| || || || || || || | || Sbjct 492546 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCACCA 492605 Query 364577 CTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 ||| ||| | |||| || |||| ||| || || ||||| |||||| || Sbjct 492606 TGTCG-GTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGTT 492664 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG 364695 || ||||| | |||||| ||| | |||||||||| ||| || | | ||| ||||| Sbjct 492665 TCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGG 492724 Query 364696 GATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCC 364754 ||| | | | | | | ||||| |||| ||| |||||||| || | ||||| Sbjct 492725 GATGCTTTGAAGGAGC-AGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 492783 Query 364755 CATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTAC 364814 |||||| || || || | |||||| | || |||||||||||||| || || | || Sbjct 492784 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 492843 Query 364815 AAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874 ||| | || || || |||||| | || || || | ||| || || | || Sbjct 492844 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 492903 Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934 | |||||||| |||| || |||||| || |||||||||| ||||| || Sbjct 492904 CTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCATCATTGC 492963 Query 364935 CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAA 364994 || || ||||| | |||||||| || |||| || | ||| | | ||||| Sbjct 492964 CGAGAACGGTTCCATCCAGAACATCCCCAACATTCCTACTGAGGTCAAGGCCCTGTACAA 493023 Query 364995 AACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTT 365054 || || ||||| || || ||| ||| | | | ||||| ||||| || ||||| || Sbjct 493024 GACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGGTGCCTT 493083 Query 365055 TATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTAC 365114 ||| ||| |||||| | ||| | ||||| | || ||| | |||| | || Sbjct 493084 CATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAAGATAAC 493143 Query 365115 ATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||||| ||| ||||| ||| || ||||| || Sbjct 493144 CAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGG 493185 >seq463 Length=83378 Score = 91.5 bits (100), Expect = 4e-13 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGT--TCATTCGCGGAACGT 22494 || ||||| || ||||| ||||| ||||| | | |||| | || || ||||| | ||| Sbjct 56446 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCGT 56505 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || |||| || || | ||||| || || ||||| || || || | ||||| Sbjct 56506 CTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 56565 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| ||||||| ||||| || || || || ||| | || || Sbjct 56566 TGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 56625 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||||||||||||| ||||| || || || Sbjct 56626 GATGAGGGTCTTCACACCGACTTCGCCTG 56654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345651172232