Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq347 136 3e-27
seq338 125 5e-24
seq226 89.7 3e-13
>seq347
Length=5318
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3878 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3819
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 3818 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 3784
>seq338
Length=210490
Score = 125 bits (138), Expect = 5e-24
Identities = 204/294 (69%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253
|||||| ||||| || ||||| ||| | ||| | ||||| ||||||| ||||| ||
Sbjct 195523 GGACGCTTTCTATCGTTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 195464
Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313
||| || || ||||| | |||||| || || ||| || | |||| || || |
Sbjct 195463 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTTGCTCAGTCCCTCGCCCGTCCCGG 195404
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| |||| | || || ||||| | ||| || || || ||||| | |||| | |
Sbjct 195403 CGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTTGACCCCGC 195344
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| | ||||| || || ||| | ||||||||||||||| || ||
Sbjct 195343 CGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGACCACCTCGA 195284
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||||| || ||||||||| || || | | ||| | ||||| ||||||||
Sbjct 195283 CGGCTTCATCAACAAGTTTGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 195230
>seq226
Length=343012
Score = 89.7 bits (98), Expect = 3e-13
Identities = 75/91 (82%), Gaps = 6/91 (7%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
||||| || |||||||||||| |||||||| ||||||||||| | || ||||||||
Sbjct 322963 AAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGAAGCAGTGGGAATCTCGT 323022
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987
| ||| |||| |||||||||||| ||||||
Sbjct 323023 TGGTCCATTCAGGCGCGTCACTAA-TAGATG 323052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945256887556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |