Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq341 176 8e-39 seq213 172 1e-37 seq430 138 2e-27 seq463 134 3e-26 seq38 104 4e-17 seq168 84.2 4e-11 >seq341 Length=430742 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 392430 CCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 392489 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | || |||||||| || Sbjct 392490 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 392549 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||||| ||||| || Sbjct 392550 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 392609 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || ||||||||||||||||| |||||||| Sbjct 392610 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 392656 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | || ||||| ||||| || |||||||| ||||| Sbjct 392202 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 392261 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || |||||||| || || || || || | || |||||||| ||| Sbjct 392262 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 392321 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || || ||||| | || || || Sbjct 392322 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 392381 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || ||||| || | |||||||||||| || ||||| Sbjct 392382 TCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 392428 >seq213 Length=714089 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || |||||||| || |||||||| || |||||| Sbjct 265288 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 265229 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || || Sbjct 265228 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 265169 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 265168 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 265109 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 265108 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 265059 >seq430 Length=288064 Score = 138 bits (152), Expect = 2e-27 Identities = 661/1036 (64%), Gaps = 40/1036 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 135253 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 135312 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 135313 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 135372 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| |||||||| |||| |||||| ||||| ||||| ||||| Sbjct 135373 ACGAGCTCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCAATG 135432 Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG-- 225216 || | || ||||| || | ||| ||| | | || ||| ||||| || Sbjct 135433 ACCGCGATACGGGAGCCGAGAGAGCA--CTGGAAAGAAATGTC-CTG--GATCTGGGGCT 135487 Query 225217 -GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266 || || |||| |||| || | ||||||| |||||| | Sbjct 135488 TGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTGG 135541 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| ||| || | | || Sbjct 135542 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGT 135601 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386 | | || |||||||| || || |||| ||| ||||| | |||||| | Sbjct 135602 CGCTGAGCTCGTAGTAGGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTCAGGTTAC 135661 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445 | ||| | ||||||||| | || |||| || || || ||| | ||| || | Sbjct 135662 CACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTTG 135717 Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAG 225504 || |||||| ||||||||||||| || |||||||| | || | | || | | ||| Sbjct 135718 TCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTC-TGGAG 135773 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | |||||| ||||| | ||||||| |||||| || || ||||| ||||| Sbjct 135774 GTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAAG 135833 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||||| || | | || || || || | || |||||||| ||||| || || Sbjct 135834 CAGGATATCGGGGGCCTCGAAGACAGCACGGCACAAAGCGAGCTTCATCTTCCAACCACC 135893 Query 225625 GGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT-TCGTCAAAGCCGTACTCCAGGAGCG 225683 || |||| ||| | | | | | ||| ||| ||||||| |||| ||| Sbjct 135894 AGAGAGGGCAGAGATCTCACCCTTGACCAT-GCTGTCGGTAAAGCCGAACTCGTTCAGCT 135952 Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGT 225740 | || || | || || || | | | ||| | | | | | | | Sbjct 135953 TGGCCTCGACGTCGGCCTGGGAAGTCTCGACACCAGCATCCTGGAGCTTCTTCATGGTCC 136012 Query 225741 AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCC 225800 | || |||||| || | | ||| | ||||| |||||| || ||| | || ||| Sbjct 136013 ACTCGATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGTCT 136072 Query 225801 GGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGG 225860 || || || | |||||| ||||| | ||| | || || || || | || | Sbjct 136073 TGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAGAG 136132 Query 225861 TACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGA 225920 | |||||| | |||||||||||| || ||||| | | || ||||||| || Sbjct 136133 TGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGA 136192 Query 225921 GGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACA 225980 || | || ||| || ||||||||| |||| |||||||| ||||| ||| | ||| | Sbjct 136193 GGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAAA 136252 Query 225981 GGTCCTCACCCTCCTC 225996 ||||||| |||||||| Sbjct 136253 GGTCCTCGCCCTCCTC 136268 >seq463 Length=83378 Score = 134 bits (148), Expect = 3e-26 Identities = 321/479 (67%), Gaps = 16/479 (3%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 56960 TTCATGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCG 56901 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048 | ||||| ||| |||||||||||||||||||| | | | | | || |||| Sbjct 56900 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGT--TGGAAGACTTGTAGAC--CTTGTC 56845 Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 | ||||| || || | |||||| || || ||||| |||||||| ||||||||| Sbjct 56844 ATTGCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTT 56785 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 ||||||||||| | || ||| || | || ||| | ||| |||| || | Sbjct 56784 GGAGTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTT 56725 Query 10169 GACCGCTTCCTCGACGATG--CTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCT 10224 ||| || || ||| |||| ||| | ||| | | ||| | ||||| ||| | Sbjct 56724 GACAGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGT 56669 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 || || ||||| | || | ||| || ||||| || || ||| | ||||| Sbjct 56668 GAGAGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGT 56609 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344 |||| || |||||||||||| || || || || |||||||| |||| | ||| | Sbjct 56608 TGGAGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGG 56549 Query 10345 ACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403 ||| ||| | | |||||| ||| | |||| ||||| |||| ||||||||| Sbjct 56548 CACCGCTGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAG 56490 >seq38 Length=232388 Score = 104 bits (114), Expect = 4e-17 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGA---TGGACGACACGTTCGTCAGGCCCTT 225501 ||| ||||||||||||||||| || || || | ||| | || || || ||| Sbjct 58813 GTCGAGGAAGCCAGAGTCGTGAGAAACGATCAAACTGGTAATCTCGGG-GT--GGGTCTT 58757 Query 225502 GAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561 ||||| || |||||| || | |||| || |||| |||||| ||||||||||| || Sbjct 58756 GAGGTAGGTCTCGAGCCAGGCAATGTTGGCAACATCCAAGTGGTTGGTAGGTTCGTCGAG 58697 Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621 ||||||| ||| || | |||| ||||| || | |||| || |||||| ||||| || Sbjct 58696 CAGCAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAGAGCCAACTTCATCTTCCATCC 58637 Query 225622 CCCGGACAGGGAGCCGA 225638 || ||||| ||||||| Sbjct 58636 ACCAGACAGAGAGCCGA 58620 >seq168 Length=159827 Score = 84.2 bits (92), Expect = 4e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||| |||||||| || | ||| | ||||||| ||||||||||||| ||||| || Sbjct 45590 AATGCCCTCCTTGTCCTGGACCTTGGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 45531 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447 || | ||||||||| || || ||||| |||||| Sbjct 45530 CTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 45497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616916346720