Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq188 383 2e-101 >seq188 Length=580545 Score = 383 bits (424), Expect = 2e-101 Identities = 1097/1672 (66%), Gaps = 40/1672 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||| |||||| || |||||||||||| | || ||| Sbjct 491402 AACTACCAATACTTCGGCTTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGC 491461 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| |||| || || || | ||||| |||||| | || || || || Sbjct 491462 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGAC 491521 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||| | | || | | | || ||| | |||| | || ||| Sbjct 491522 GACGTTGAGCGCGTCATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCC 491581 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || || || |||||||| || ||||| | | ||| |||| || || ||||| | Sbjct 491582 TCTCCCACACTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTC 491641 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||||| || || || | |||| ||||||| || || | || Sbjct 491642 GAC-ATGAAGGAGGACTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGAT 491700 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || ||| |||||| | | || |||| || || || Sbjct 491701 CTCCAAGATGGCCGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATA 491760 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 || ||| || || || ||||||||||| |||||||||||||||| ||||||||||| Sbjct 491761 TATTGCCGGCACGAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAA 491820 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || |||||||| ||||||||||| | | | ||| ||||||| | || || Sbjct 491821 CACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCT 491880 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||||| || || | ||| | || |||| |||||||||||||| || Sbjct 491881 TGAGCCTTGGCACGCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGA 491940 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | ||| | ||||| ||| ||| |||||| | || ||||| || ||||| | Sbjct 491941 GGAGGTTCGCGCCCGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAG 492000 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||| || | ||||| ||| | || ||||| ||||| || || ||| |||| Sbjct 492001 GGTGGAGAAGAATGGGGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGA 492060 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 | | || | ||||| | |||||| | ||||| | |||||||| | Sbjct 492061 CTGCTACGGCGAGGAGTTTGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG 492120 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||| ||| | ||| |||||| ||| || ||| | || | ||| ||||| || Sbjct 492121 CAAGACCATGAAGGCTCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGG 492180 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || |||| ||| | | |||||| | | |||| |||| ||||||| || |||| || Sbjct 492181 TAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 492240 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || || ||||| |||||| ||||||| | || || ||| | Sbjct 492241 CACTATCCGCAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGT 492300 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673 ||||| || ||||||| ||| || |||| |||| || || || ||||| | Sbjct 492301 CGCTGTCTGCAACCTGGCCTCGCTCGCCCTGCCCACCTTTGT------TGACTACA--AC 492352 Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTC-TTG---- 94728 | | || | ||| | || |||| | || || | |||| ||| Sbjct 492353 GAGGGAGTC-TACGACTTCCAGAAGCT------CCACGAGGTCACCCAGGTCGTTGTCCG 492405 Query 94729 -AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||||||||||| | |||||| ||| |||||| || | |||||| ||| || Sbjct 492406 CAACCTGAACAGAATCATCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAA 492465 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || || || |||||||| |||| ||||||||| | || || || | || | Sbjct 492466 CATGCGCCACCGCCCCATCGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCT 492525 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 ||| |||||| ||| ||| ||| || | | || ||| || ||||| | ||| Sbjct 492526 CCGTATGCCCTTCGAGTCTCCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCAT 492585 Query 94908 TTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC-ACG 94966 || ||| ||| | | || || || |||||| ||| || ||||| | || Sbjct 492586 CTACCACGCTGCCCTCACCATGTCGGTGCAGCTGGCCA---AGGA-GGAGGGCCCCTACC 492641 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | ||| | || || || | |||||||| | |||| ||| | ||| ||| | Sbjct 492642 AGACGTACGAGGGTTCCCCTGTTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCA 492701 Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGT 95084 ||||||||| ||| | |||||||| ||| | | | || || ||| | |||||||| Sbjct 492702 AGCCCTCGGATCTCTGGGACTGGGATGCTTTGAAGGAGCAGA--TTAAGCAGCACGGTGT 492759 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 ||| | || || || || |||||||| || ||| ||| |||||||| | ||||| Sbjct 492760 CCGCAACTCTCTTCTCGTCGCGCCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAA 492819 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||||| || || |||| |||||||||| | ||| | | || || || || || || Sbjct 492820 CAACGAGTGCTTTGAGCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGA 492879 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGG---G 95260 |||| || ||||| ||| | ||| || | || | ||||| ||||| | Sbjct 492880 GTTCCAGGTTGTCAACCCTTGGCTCTTGAAGGATCTCGTCGAC-ATGGGTCTGTGGTCCG 492938 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAA 95320 || || | ||||||| | | || ||||| ||| ||||||||||||| | | Sbjct 492939 ATGCCA---TGAAGAACCGCATCATTGCCGAGAACGGTTCCATCCAGAACATCCCCAACA 492995 Query 95321 TACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || || ||||||| || |||||||| || ||||||||| ||||||| Sbjct 492996 TTCCTACTGAGGTCAAGGCCCTGTACAAGACTGTTTGGGAGATCTCGCAGCG 493047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720256396960