Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq341 120 3e-22 seq463 116 4e-21 seq213 109 5e-19 seq207 91.5 1e-13 >seq341 Length=430742 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||| | ||| ||||| || || || |||||||| | || |||||| ||| || | ||| Sbjct 392225 ATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTG 392284 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 || ||||| |||| | |||||||| |||||||| ||||||||||||||| || || Sbjct 392285 CTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTT 392344 Query 127030 CTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGG 127088 | ||||| |||| || | ||||||| | |||||| || | || | ||| || || | Sbjct 392345 CGACTTGACGTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAG 392403 Query 127089 TCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || ||||| ||||| Sbjct 392404 TCAAGGTCTTGACGAAAATTTGCAT 392428 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || || |||||| ||| || ||||| ||||| Sbjct 392460 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCG 392519 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| ||||| || || |||||||||||| ||| ||| |||| Sbjct 392520 GCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTG 392579 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||||| || | ||| | || ||||| || || || Sbjct 392580 ACGTTG-TCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGT 392638 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 392639 CTTGACGAAGATCTGCAT 392656 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||| || ||||| ||||||||| | Sbjct 392658 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 392717 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 392718 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 392777 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| | | || ||||| | |||| ||| || | | ||| || Sbjct 392778 ATGCCCTCCTTGTCC-TGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAAC 392836 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || |||||||| || || || || Sbjct 392837 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 392872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 392942 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 393001 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| | |||| |||||||| || || || Sbjct 393002 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 393061 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||| || | |||||| Sbjct 393062 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACC 393121 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 || | ||| | || |||||||| Sbjct 393122 TCAAGGGTGATGGTCTTGCCGGT 393144 >seq463 Length=83378 Score = 116 bits (128), Expect = 4e-21 Identities = 339/517 (66%), Gaps = 19/517 (4%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| |||||| |||||| ||| | || || ||| || Sbjct 56434 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAA-GTC-CT 56491 Query 47130 C--TGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187 | | ||| | ||| | | || |||||| ||| ||||| |||||||| || || Sbjct 56492 CCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCT 56551 Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247 | || | || || | | || | || |||||||||| || || || ||||| Sbjct 56552 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACG 56611 Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AAC 47303 |||| ||||| | || || || || |||||| |||| ||||| ||| |||| | | Sbjct 56612 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCACC 56671 Query 47304 ACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361 | ||| || | | ||| || | | | || ||||| | | ||| || | Sbjct 56672 TCAAGAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATCATCGTCGATGCTG 56722 Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421 || |||||| |||||| | ||||||||||||| || | | || |||||| Sbjct 56723 TCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACT 56782 Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481 | | |||||| ||||||| || ||||| ||||||||||| | ||| || Sbjct 56783 CCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTCTTGGTTGCTCTCGGCA 56842 Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541 || |||| | ||| | | || || || || || ||| | ||||| || || | | Sbjct 56843 ATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCG 56902 Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||||| || |||||||| || | ||| || Sbjct 56903 GCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 56939 >seq213 Length=714089 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| Sbjct 265288 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 265229 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| |||||||| |||||| |||||||| || || || Sbjct 265228 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 265169 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 265168 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 265109 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 265108 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 265061 >seq207 Length=219550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || || ||| ||||| Sbjct 185373 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 185314 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 185313 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 185254 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || || || ||||| || || || ||| Sbjct 185253 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 185194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497970770240