Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq188 273 3e-68
>seq188
Length=580545
Score = 273 bits (302), Expect = 3e-68
Identities = 1172/1832 (64%), Gaps = 43/1832 (2%)
Strand=Plus/Minus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||||||||| || |||| | || ||||||||||| |||||||| || |
Sbjct 493232 TGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGC 493173
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
| |||||||| | | |||||| || | |||| | || || | ||||
Sbjct 493172 CGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGT 493113
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
| ||| | || || || ||||||||| || || || || ||||| | | |
Sbjct 493112 GAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAA 493053
Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765
|| | | ||| ||||| ||||| |||| ||| ||| | ||| || || |
Sbjct 493052 CAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGT 492993
Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822
||| || ||||| || ||| || | | |||| | | |||||| | | |
Sbjct 492992 TGGGGATGTTCTGGATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGG 492936
Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882
|||| ||||| || | |||||||| || ||| |||||||| |||||||
Sbjct 492935 ACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCAC 492876
Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942
| || || || | | | |||||||||| ||||| |||||||||||||| ||||| |
Sbjct 492875 CAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGC 492816
Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002
||||||| || | ||| ||| || |||||||| || | |||||| |||||||| ||
Sbjct 492815 CCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACAC 492756
Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 116062
| | | |||| | ||||| | || |||||||| || | | || | |
Sbjct 492755 CGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACAT 492696
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
|||||| ||| |||||||||| || || || | || || ||||| | |||| || |
Sbjct 492695 TCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 492636
Query 116123 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179
||||||| ||| |||| | | || | | |||||| ||||| || || ||||
Sbjct 492635 GGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAGGGCAGCGTGGTAGATGGTCT 492579
Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAA 116239
| || || || | | |||||| || || || | | |||| |
Sbjct 492578 CGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCA 492519
Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299
|| |||| || ||||| ||||||||||| || || ||||| || | ||| || |
Sbjct 492518 GGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGT 492459
Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359
| ||||| || || || || || ||||| | || || || || | |
Sbjct 492458 TGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAA 492399
Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG--- 116415
| |||| |||| || || ||||| | | | || | ||| | ||| | | |
Sbjct 492398 CGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACTCC----CTCGTTGTAGTCA 492343
Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475
||| | | || ||||||| || ||||| || || |||| | |||||| | |
Sbjct 492342 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 492283
Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535
||||| ||||| ||||| || | || || || || ||||| | |||||| || ||
Sbjct 492282 TACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTG 492223
Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595
||| ||| ||||||||||||||||| | || | || ||||| || |||| |
Sbjct 492222 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCC 492163
Query 116596 TTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG----CTCGCCCCT 116650
| ||| || || | ||| | | || | | || || ||| ||| || |||| |
Sbjct 492162 TCGAGGATGGCATACCAGAGCTTCTGAGCCTT---CA-TGGTCTTGCGACCCTTGCCCAT 492107
Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCT 116709
| | ||||||||| ||| | |||||||||||| || || ||| || | || ||
Sbjct 492106 C-TGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGT-AGCAGTCGGCCAGGCCA 492049
Query 116710 GGTGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768
|| || || ||| || | ||||| ||| | ||| || ||| |||| |||||||||
Sbjct 492048 GG-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAA 491990
Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828
|||||| || |||||||| || ||| || || || |||| | || || | || ||
Sbjct 491989 GAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTG 491930
Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888
|| ||||| ||||| ||||| | || ||| |||||||| || || ||||| | ||
Sbjct 491929 GTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGC 491870
Query 116889 GATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATAC 116945
|| | || ||| ||| |||||| || || | || || ||| || ||
Sbjct 491869 GAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 491810
Query 116946 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTT 117005
|| ||||| || | || ||| | || || || || || |||| || | |
Sbjct 491809 ACGGAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGT 491750
Query 117006 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCA 117065
||| | || ||||| || | |||||| || || ||| ||| ||||| |||||
Sbjct 491749 GGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 491690
Query 117066 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 117125
| |||| || | ||||| || || || ||||| |||| | ||| |||||||||
Sbjct 491689 AGTCTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCA 491630
Query 117126 GCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184
|||| || ||||| || ||||| ||||||||||| || || | ||||| |||
Sbjct 491629 AGAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA 491571
Query 117185 ACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242
| | |||| |||||| | |||||| || | ||| || ||| || ||
Sbjct 491570 --AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA 491513
Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 117302
||||| | | ||| ||||| | ||||| |||||| | || | | || || ||
Sbjct 491512 GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG 491453
Query 117303 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334
| | ||||||| ||||||| |||||||
Sbjct 491452 CTTGAGGAGGTATGATCTCTCCAAAGTCTTGA 491421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613503549632160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |