Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq207 138 1e-27
seq341 132 5e-26
seq213 131 2e-25
>seq207
Length=219550
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| |
Sbjct 185375 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 185316
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||||| || | || |||||||||| |||||| ||||| |
Sbjct 185315 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 185256
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || || | || ||||| || |||||||| || || || |
Sbjct 185255 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 185196
Query 46584 A 46584
|
Sbjct 185195 A 185195
>seq341
Length=430742
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| || |||| ||| |||||| ||||| |||||||| || || ||||| | || ||
Sbjct 392448 ACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 392507
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| |||||||| |||| |||||||||||||| || | | |||||||||| |
Sbjct 392508 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 392567
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| ||| | | | ||||| |||||| || || | || || || ||
Sbjct 392568 ATCTTCGACTTGA-CGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTT 392626
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || || ||||| |||||
Sbjct 392627 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 392656
Score = 114 bits (126), Expect = 1e-20
Identities = 126/168 (75%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || |||||||| ||||||||
Sbjct 392977 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAA 393036
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 393037 AATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATT 393096
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | || ||| || || || || | |||||||| ||||| ||
Sbjct 393097 GTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 393144
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| || | || |||||| || || ||||| ||||| || || || |
Sbjct 392669 ACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCC 392728
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||||||||| ||||| ||||||||||||||||| | || | || ||||||
Sbjct 392729 GTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTT 392788
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||| ||||| | | | || || || || || || | |||||
Sbjct 392789 GTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGAT 392848
Query 46558 GGTTTTGCCCGTCAGCGTTTTAAC 46581
||| ||||| || ||||| || ||
Sbjct 392849 GGTCTTGCCGGTAAGCGTCTTGAC 392872
>seq213
Length=714089
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| ||||||||||| || || ||
Sbjct 265253 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAA 265194
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 265193 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 265134
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || ||||| || | ||||| || || ||||| || || || ||
Sbjct 265133 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGAC 265074
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 265073 GAAGATCTGCAT 265062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565235036831520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |