Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq463 149 6e-31
seq341 123 2e-23
seq213 118 1e-21
seq207 105 7e-18
>seq463
Length=83378
Score = 149 bits (164), Expect = 6e-31
Identities = 200/277 (72%), Gaps = 5/277 (2%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||||||||| ||| || | || ||||| | ||||||||| |||||| ||
Sbjct 56322 GTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 56263
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||| || ||||| || |||||| ||||| || || ||| |||||||||| ||
Sbjct 56262 GCCATAGAAGCAACGGGCCTCGGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAAGTT 56203
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|| ||||| |||||||| |||||||| ||||| || | |||| |||||| |
Sbjct 56202 CTCATTGACAATGCCGTCAGAAGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 56143
Query 133347 CTCGTTGTCGTTCA----AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
||| | ||||| | | | | ||||||| | ||||||||||| || | |||||
Sbjct 56142 CTCATCCTCGTTGATCTTATTG-TTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCT 56084
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| ||||||| || || ||||| || || ||||||||
Sbjct 56083 CGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 56047
>seq341
Length=430742
Score = 123 bits (136), Expect = 2e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| ||||| ||||||||| | || |||||| || |||| | | | | | | ||
Sbjct 393146 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 393087
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
||| |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| || |
Sbjct 393086 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 393027
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| |||||||| ||||||||||||||| ||||| | || || |
Sbjct 393026 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 392967
Query 38446 ATTTGGTGCTGCG 38458
| ||||| || ||
Sbjct 392966 ACTTGGTTCTCCG 392954
Score = 113 bits (124), Expect = 5e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || || ||| | || ||||| | |
Sbjct 392656 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 392597
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| || ||| |||||||
Sbjct 392596 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 392538
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| || || |||||||| || | |||||||| ||||||||
Sbjct 392537 GCAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 392478
Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446
|||||| ||||| | || |||||
Sbjct 392477 CATCCAGAAGGAGTCTACCCTGCA 392454
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 38248 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA 38307
|| || |||| || ||||| || ||||| ||||||||| | || || ||| | | || |
Sbjct 392880 AACTAGTCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATA 392821
Query 38308 GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGC 38367
| | | | | || ||| || | ||||| ||||| |||||| | ||||| ||||
Sbjct 392820 CCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGC 392761
Query 38368 GGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 38427
| | || | ||| ||||| ||||| || |||| || ||||| ||| |||||||| |
Sbjct 392760 GCTTGATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTC 392701
Query 38428 AAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
| ||||| | || || || ||||||||||||
Sbjct 392700 AGAAGGAGTCCACCCTCCACTTGGTGCTGCGT 392669
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || || || || | || |||||| | |
Sbjct 392428 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 392369
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || || | ||||| ||||| ||||| |||||||
Sbjct 392368 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 392310
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || ||| |||| || | |||||| | | || |||||
Sbjct 392309 GCAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAA 392250
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| ||||||| ||| | || || ||| || | || ||
Sbjct 392249 CATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGG 392202
>seq213
Length=714089
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || ||||| || || |||||| | || || ||| | ||
Sbjct 265062 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 265121
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| | |||||
Sbjct 265122 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 265181
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || ||||| || |||| ||||||||| ||||||||||
Sbjct 265182 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 265241
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || ||||| |||||
Sbjct 265242 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCG 265276
>seq207
Length=219550
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 185195 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 185254
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| ||||||| ||||| |
Sbjct 185255 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 185314
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 185315 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 185374
Query 38433 G 38433
|
Sbjct 185375 G 185375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169823971840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |