Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq188 259 6e-64 seq463 143 3e-29 >seq188 Length=580545 Score = 259 bits (286), Expect = 6e-64 Identities = 963/1495 (64%), Gaps = 31/1495 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | |||||| || || || |||| || Sbjct 491477 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 491536 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || |||||| | | |||| ||||| | || || |||||| Sbjct 491537 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCCACACTCTTC 491596 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || |||| ||||| ||| ||||| | | | |||||||| Sbjct 491597 AACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGAC 491656 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || || | ||| |||| || ||| ||||| ||| ||| ||| Sbjct 491657 TCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGT 491716 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || | || |||| || | |||| | || |||| || || || Sbjct 491717 GGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAAC 491776 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||| | | || ||||| || || || ||| ||| || ||||| || Sbjct 491777 GGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTC 491836 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 |||| | ||| ||| | | || || |||| | || |||||||| |||||| Sbjct 491837 GACCAGGGTGGCAACAAGCGCCCC---GGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 491893 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | || ||| | || ||||| ||||| || | ||||||| || | Sbjct 491894 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 491953 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || || ||| ||| ||||||||||| || |||||||||||||| || ||| ||| | Sbjct 491954 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 492013 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 || | ||| ||||| | || || || || || || || || |||| | || || Sbjct 492014 GGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGCGA 492072 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262 ||||||||| ||| | ||| |||||||| | ||| | | | | | || ||| || Sbjct 492073 GGAGTTTGAGGCCTTGTACGAGAAGTACGA-GCAGATGGGCAAGGGTC-GCAAGACCATG 492130 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 ||| | || | | ||| | || || ||| || | || ||||||||||||| || | Sbjct 492131 AAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTT 492189 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||||| ||||| || ||| |||| ||||| || || ||||| | || ||| Sbjct 492190 CATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCG 492249 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || ||||||||||| || || || | || | | |||||| ||||| || Sbjct 492250 CAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTG 492309 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATT 112500 ||||| || || |||| || |||| | ||| || | || || || | | || | Sbjct 492310 CAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGACT 492368 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || | || ||||| |||||| | || || Sbjct 492369 TCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGACG 492428 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||| ||| || ||||| || || ||| | ||||| || || |||| Sbjct 492429 TCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGGTC 492488 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCCG 112677 |||||||||| ||||| || |||| ||| | ||| || | | || || || Sbjct 492489 TCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTCTC 492545 Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737 ||| || || |||| | || || ||||| || || ||||| || || Sbjct 492546 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCT---CA 492602 Query 112738 CGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794 | | |||| || |||| ||| || || || || | || | |||||||| || | Sbjct 492603 CCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTG 492662 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854 ||| || || | || || | ||| |||||| | | || || | || || |||| Sbjct 492663 TTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACT 492722 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 |||| ||| | ||||| | || ||| || | ||| | || ||| |||| | | || | Sbjct 492723 GGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGC 492782 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| || ||| |||| | || |||||||| || || || |||||||| ||||||| Sbjct 492783 CCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACA 492842 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034 | | |||||||| | | | | || || || ||||| | |||||||| | Sbjct 492843 CCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGC 492902 Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 || || | || ||| || || ||||| |||||| | | |||||| | | ||| Sbjct 492903 TCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 492957 >seq463 Length=83378 Score = 143 bits (158), Expect = 3e-29 Identities = 168/225 (75%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155 |||||| |||||||| || || | ||||| || || ||||| |||||||| || Sbjct 56422 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 56478 Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215 ||| ||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 56479 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 56535 Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275 |||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| ||| Sbjct 56536 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 56595 Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||||||||||||| ||||||||||| ||||| || ||| Sbjct 56596 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 56640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738706582720