Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq188 271 9e-68 seq385 100 3e-16 >seq188 Length=580545 Score = 271 bits (300), Expect = 9e-68 Identities = 1128/1754 (64%), Gaps = 57/1754 (3%) Strand=Plus/Minus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| || ||| || || ||||| ||||| || || || |||||| || | |||| Sbjct 493209 GCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGC 493150 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | | ||| | ||||| || ||| | ||| | |||||| ||||| Sbjct 493149 ATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGG 493090 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTA-ATTTC 109574 |||||||| |||||| || || ||||| | | | ||| || || | || || Sbjct 493089 TCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCT----GCGAGATCTC 493034 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| ||||||||||||| ||||| ||| ||||||| |||||| || || || Sbjct 493033 CCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTGGATGGA 492974 Query 109635 GCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTT 109691 ||| || | |||| | | |||||| | | ||||| ||||| | | Sbjct 492973 ---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGAC 492917 Query 109692 GAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGG 109749 |||||| | ||||| | | ||||| || || ||||||||||| || || Sbjct 492916 GAGATCCTT--CAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGC 492859 Query 109750 AGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTG 109809 |||||||||| | |||||||| || || ||||| |||||||| | ||| || | ||| Sbjct 492858 TGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTG 492799 Query 109810 GAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGC 109869 || || |||||||| || | ||||||| ||| |||| ||| | | ||| | | || Sbjct 492798 CTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGC 492739 Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCT 109929 || || || ||||| || | || | | | | || ||| |||||| || Sbjct 492738 TCCTTCAAAGCATCCCAGTCCCAGAGATC-CGAG-----GGCTTGACATTCCACATGTCA 492685 Query 109930 GGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACC 109989 || || | |||| || | |||| ||||||| | | ||| ||| | ||||| || Sbjct 492684 TACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCC 492625 Query 109990 TCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA 110049 | ||||| || || || || || || || || ||||| || || | Sbjct 492624 TTGGCCAGCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTG 492565 Query 110050 TTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCT 110109 || | | ||||| ||| | | |||||||| | || | | || |||| || Sbjct 492564 TTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCA 492505 Query 110110 AGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT 110169 |||||||| ||||||||||| |||||||| || |||||| | ||||| | Sbjct 492504 AGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGA 492445 Query 110170 ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATT 110229 || ||||| |||| |||||||| | || || || || || |||| Sbjct 492444 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACC 492385 Query 110230 TCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG---ACATATTTGGGGAGA 110286 || ||||| || | | | ||| | | | | ||| || | | ||| | |||| || Sbjct 492384 TCGTGGAGCTTCTGGAAGTCGTA-GACTCC--CTCGTTGTAGTCAACAAAGGTGGGCAGG 492328 Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 || | || || || ||||| |||| ||| || || ||| || | ||| ||| Sbjct 492327 GCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCC 492268 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | |||||| || || || | ||||||||| || ||| |||| Sbjct 492267 GTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 492208 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 |||||||| ||||||||| | ||| ||||||| || ||||| | || ||| ||||| | | Sbjct 492207 GCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATAC 492148 Query 110467 CATA-CATCGGCGGCGG---GGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGT 110522 || | | || | | | || | ||||| | | || || | ||||||||| Sbjct 492147 CAGAGCTTCTGAGCCTTCATGGTC--TTGCGACC-CTTGCCCATC-TGCTCGTACTTCTC 492092 Query 110523 GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GTCGGGAC 110581 ||||||| ||||||| |||| ||||| || | || || || || || ||| | Sbjct 492091 GTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCATTCGTTGGGGC 492033 Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641 | | ||| | ||| | ||| || ||| |||||||||||||| ||||| |||||||| | Sbjct 492032 ACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGA 491973 Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCA 110701 || ||||||||||||| ||| |||| || | || ||||| ||| | |||| Sbjct 491972 GGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCA 491913 Query 110702 AAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA------GACAGCGATGGATCCCT 110755 | ||||| | || ||| | |||||| || || || || || ||| || | || Sbjct 491912 AGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCT 491853 Query 110756 TACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815 | | | || |||||| || ||||| || ||| |||||||| | ||||||||| | Sbjct 491852 T--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGA 491796 Query 110816 TAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGT 110875 | || | ||| ||| || || || ||| || |||| || ||| || Sbjct 491795 CGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGT 491736 Query 110876 GGATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGT 110933 ||| | | |||||| ||||| ||| ||| || | | ||| | ||| |||| || Sbjct 491735 GGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGT 491678 Query 110934 ACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993 |||| ||||| ||||| || || |||| || | | || |||||||| |||| ||| Sbjct 491677 GTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG 491618 Query 110994 AGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--G 111051 | |||| || || || ||||||||||| || | || ||| ||| ||| |||| Sbjct 491617 GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA--AGAACTTGCTC 491560 Query 111052 GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCA 111111 |||||| |||||| || |||| || || || | ||| ||||||| ||| Sbjct 491559 GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCG 491500 Query 111112 ACTCGCATGAACAT 111125 || ||||||| ||| Sbjct 491499 ACACGCATGATCAT 491486 >seq385 Length=191686 Score = 100 bits (110), Expect = 3e-16 Identities = 329/505 (65%), Gaps = 25/505 (5%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | ||||| | || ||||| ||| | | ||| || | || Sbjct 129322 TCGAAACGGCCGGGACGCATCAGAGCCTTGTCGAGAATGTCGGCTCTGTTGGTGCCCGCG 129263 Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | || | ||| | ||| |||||||||||| || ||||| | |||||| Sbjct 129262 AGCACAACCA--CCTG-CTCCTGGGTGTTGAAACCGTCCATCTCGGTGAGGATCTGGTTC 129206 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCC--GAACGCTTC 11673 | || || ||||| |||||| | ||| | | |||| | || || Sbjct 129205 AGGGTAGCCTCGCGCTCGTCGTTGCCGCCCATGCGGTTGCCCTCCTGTCTCGATCG---- 129150 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||| | ||||| ||||| || ||||| | || || || ||| || ||| | Sbjct 129149 --ACCAATGGCGTCGATCTCGTCAATGAAGATAATGCAAGGGGCGTTCTTCCGCGCCGTT 129092 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 |||| || || || || | | |||||||| ||||||||||| ||||| | | Sbjct 129091 GCGAACAGGTCGCGCACTCTGGAAGGACCAACACCGACGAACATCTCGACGAACTCGGAA 129032 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || || | ||||| |||||| || ||||| ||||| |||| || || || | Sbjct 129031 CCGCTGA-CGCTGAA-GAAGGGCACGCCGGACTCGCCAGCAGTGGCCTTGGCAAGCAGCG 128974 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTC 11911 ||||||| || || || | ||||| || | || || ||||||||||||||||| | Sbjct 128973 TCTTACCGGTTCCGGGAGGTCCAGCCAGGATAGCACCGCGGGGGATCTTGGCACCTAACC 128914 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971 | ||||||| || |||| | |||| || | |||| | ||| |||||| Sbjct 128913 GCTCGAAGCGCTCGGGGGTCTTCAAGAAGCTGACGAACTCCATGATCTCCGTCTTGGCCT 128854 Query 11972 AGTCGATACCCTCAACATCGGTGAA 11996 ||| || || |||| ||| |||| Sbjct 128853 CGTCCATGCCGGCAACGTCGCTGAA 128829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972495592800