Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq188 212 7e-50
seq463 96.9 4e-15
>seq188
Length=580545
Score = 212 bits (234), Expect = 7e-50
Identities = 967/1505 (64%), Gaps = 49/1505 (3%)
Strand=Plus/Minus
Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892
||| | | |||||| | | |||||| ||||| || | |||||| || | |||
Sbjct 492957 ATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAA 492898
Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952
|||||||| | ||||| || || || | | | | |||||||| | ||||||
Sbjct 492897 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 492838
Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012
|| |||||||| || || || |||||||| || | |||| ||| || ||||| || ||
Sbjct 492837 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 492778
Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 106072
| | |||| ||| || | ||| | | ||| || | ||||| | | ||||||||||
Sbjct 492777 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 492718
Query 106073 TAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130
|| || | || || || |||| |||| ||| | || || | || || || |
Sbjct 492717 CAGA-GATCCGAGGGCTTGACATTCC-ACATGTCATACTGGAGGATGCCCTGAGAAACAG 492660
Query 106131 GAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCC 106189
| |||||||| | |||| |||| || | | | |||| | ||| | |
Sbjct 492659 GGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGTG- 492601
Query 106190 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 106249
|||| ||||| || ||||| || ||||| || | || || || ||
Sbjct 492600 AGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGAC 492541
Query 106250 TCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 106308
|| || | | || ||| | || |||| || ||||| || ||||| | ||| ||
Sbjct 492540 TCGAAGGGCATA-CGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGAT 492482
Query 106309 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAAT 106368
|| | ||| ||||| || || || || || ||| || || || ||| ||
Sbjct 492481 GGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGAT 492422
Query 106369 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 106428
|| || ||| || || | ||| | || |||| || || || || | | || |
Sbjct 492421 GATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 492362
Query 106429 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482
|| || || | ||| ||| | | || ||||||| || |||| |||||
Sbjct 492361 -----GACTCCCT-CGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCA 492308
Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542
||||| |||||| | |||||| | ||| || || || | |||||| ||
Sbjct 492307 GACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCG 492248
Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602
|| || || | ||||| ||||| ||||| |||| |||||||||||||||||| |
Sbjct 492247 GATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAA 492188
Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661
||| | || ||||| ||||| | || ||| || || | ||| | | || | | ||
Sbjct 492187 GGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTC-- 492130
Query 106662 CAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718
|||| ||| ||| | ||| | ||||||||| ||| | ||| ||||||||||
Sbjct 492129 --ATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCT 492072
Query 106719 CACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA 106777
| || ||||| || || || || || || || || | |||| ||| | |||
Sbjct 492071 CGCCGTAGCAGTCGGCCAGGCCAGG-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCA 492013
Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTC 106835
|| ||| |||| ||||||||| ||||| |||||||| |||| | |||||| || |
Sbjct 492012 TTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG--TCAC 491955
Query 106836 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 106895
||| |||| || | || ||||| || || || | ||| || | || ||| |
Sbjct 491954 GGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGG 491895
Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 106951
||||||| |||||||| || | |||| || || | | | ||| | | || |
Sbjct 491894 CGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCC-ACCCTGGTCG 491836
Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011
|| ||||| || ||| ||| || || || ||||| || | | ||| | || |||
Sbjct 491835 ACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCG 491776
Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071
|| || || |||| || |||| | | |||| || | ||||| ||
Sbjct 491775 TTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCA 491716
Query 107072 CCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129
|| ||| ||| ||||| | ||||| | || | || || |||||||||| | || |
Sbjct 491715 CCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTGTCATAGATACCCTCAATAG 491658
Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCA 107188
|||||||||| || ||| ||||||||| ||||| ||| || || || ||||| ||
Sbjct 491657 AGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCG 491599
Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 107246
|||||||| || || | |||||| ||| | | |||| |||||| || ||| || |
Sbjct 491598 TTGAAGAGTGTGGGAGAGGCGTGAGTGA--AGAACTTGCTCGACATCAGGTTGTAGGTTT 491541
Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306
| | ||| |||| ||| || || ||| || | ||| |||||||| | ||||| |
Sbjct 491540 CGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCT 491481
Query 107307 GGGGT 107311
|||||
Sbjct 491480 GGGGT 491476
>seq463
Length=83378
Score = 96.9 bits (106), Expect = 4e-15
Identities = 141/198 (71%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| ||||||||||| || || || || || || |||||| || || ||||| |||||
Sbjct 56640 GTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 56581
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || | | ||| | ||| ||||||||||||||| ||
Sbjct 56580 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56521
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461
|| || |||| || |||| |||||||||| ||||| || || ||| ||||
Sbjct 56520 GGCGAAGGCAACGAGACGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTCAG 56464
Query 117462 TGCCCATTTCGCCTTCTT 117479
||||| | ||||||||
Sbjct 56463 GGCCCAGTCGGCCTTCTT 56446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589977289614240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |