Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq188 212 7e-50 seq463 96.9 4e-15 >seq188 Length=580545 Score = 212 bits (234), Expect = 7e-50 Identities = 967/1505 (64%), Gaps = 49/1505 (3%) Strand=Plus/Minus Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 ||| | | |||||| | | |||||| ||||| || | |||||| || | ||| Sbjct 492957 ATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAA 492898 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 |||||||| | ||||| || || || | | | | |||||||| | |||||| Sbjct 492897 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 492838 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || |||||||| || || || |||||||| || | |||| ||| || ||||| || || Sbjct 492837 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 492778 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 106072 | | |||| ||| || | ||| | | ||| || | ||||| | | |||||||||| Sbjct 492777 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 492718 Query 106073 TAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 || || | || || || |||| |||| ||| | || || | || || || | Sbjct 492717 CAGA-GATCCGAGGGCTTGACATTCC-ACATGTCATACTGGAGGATGCCCTGAGAAACAG 492660 Query 106131 GAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCC 106189 | |||||||| | |||| |||| || | | | |||| | ||| | | Sbjct 492659 GGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATGGTG- 492601 Query 106190 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 106249 |||| ||||| || ||||| || ||||| || | || || || || Sbjct 492600 AGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGAC 492541 Query 106250 TCAAATG-CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 106308 || || | | || ||| | || |||| || ||||| || ||||| | ||| || Sbjct 492540 TCGAAGGGCATA-CGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGAT 492482 Query 106309 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAAT 106368 || | ||| ||||| || || || || || ||| || || || ||| || Sbjct 492481 GGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGAT 492422 Query 106369 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 106428 || || ||| || || | ||| | || |||| || || || || | | || | Sbjct 492421 GATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 492362 Query 106429 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 || || || | ||| ||| | | || ||||||| || |||| ||||| Sbjct 492361 -----GACTCCCT-CGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCA 492308 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 ||||| |||||| | |||||| | ||| || || || | |||||| || Sbjct 492307 GACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCG 492248 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 || || || | ||||| ||||| ||||| |||| |||||||||||||||||| | Sbjct 492247 GATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAA 492188 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | || ||||| ||||| | || ||| || || | ||| | | || | | || Sbjct 492187 GGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTC-- 492130 Query 106662 CAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 |||| ||| ||| | ||| | ||||||||| ||| | ||| |||||||||| Sbjct 492129 --ATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCT 492072 Query 106719 CACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA 106777 | || ||||| || || || || || || || || | |||| ||| | ||| Sbjct 492071 CGCCGTAGCAGTCGGCCAGGCCAGG-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCA 492013 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTC 106835 || ||| |||| ||||||||| ||||| |||||||| |||| | |||||| || | Sbjct 492012 TTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG--TCAC 491955 Query 106836 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 106895 ||| |||| || | || ||||| || || || | ||| || | || ||| | Sbjct 491954 GGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGG 491895 Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 106951 ||||||| |||||||| || | |||| || || | | | ||| | | || | Sbjct 491894 CGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCC-ACCCTGGTCG 491836 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 || ||||| || ||| ||| || || || ||||| || | | ||| | || ||| Sbjct 491835 ACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCG 491776 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || || |||| || |||| | | |||| || | ||||| || Sbjct 491775 TTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCA 491716 Query 107072 CCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129 || ||| ||| ||||| | ||||| | || | || || |||||||||| | || | Sbjct 491715 CCGGCCATCTTGGAGATCATGGCGCA-AGTCT-TGAGGGTGTCATAGATACCCTCAATAG 491658 Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCA 107188 |||||||||| || ||| ||||||||| ||||| ||| || || || ||||| || Sbjct 491657 AGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCG 491599 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 107246 |||||||| || || | |||||| ||| | | |||| |||||| || ||| || | Sbjct 491598 TTGAAGAGTGTGGGAGAGGCGTGAGTGA--AGAACTTGCTCGACATCAGGTTGTAGGTTT 491541 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 | | ||| |||| ||| || || ||| || | ||| |||||||| | ||||| | Sbjct 491540 CGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCT 491481 Query 107307 GGGGT 107311 ||||| Sbjct 491480 GGGGT 491476 >seq463 Length=83378 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| ||||||||||| || || || || || || |||||| || || ||||| ||||| Sbjct 56640 GTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACC 56581 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | | ||| | ||| ||||||||||||||| || Sbjct 56580 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56521 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461 || || |||| || |||| |||||||||| ||||| || || ||| |||| Sbjct 56520 GGCGAAGGCAACGAGACGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTCAG 56464 Query 117462 TGCCCATTTCGCCTTCTT 117479 ||||| | |||||||| Sbjct 56463 GGCCCAGTCGGCCTTCTT 56446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977289614240