Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq341 165 2e-35 seq213 131 4e-25 seq207 107 4e-18 seq188 95.1 3e-14 >seq341 Length=430742 Score = 165 bits (182), Expect = 2e-35 Identities = 164/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| ||||| || ||||| || || || |||||||| |||| || | ||||| || Sbjct 392220 ACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAG-GTGCGACCATCCTC 392278 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||||||| || |||||||| || || ||||| ||||||||||| || ||||| || Sbjct 392279 CAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 392338 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| ||||| ||||||||| || || || || |||| |||||| Sbjct 392339 AATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTT 392398 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || ||||| | |||||| Sbjct 392399 TCCAGTCAAGGTCTTGACGAAAATTTGCAT 392428 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || ||||| |||||||||| || || | || || || ||||| Sbjct 392681 GTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGCTG 392740 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| | || || ||||| || |||||||| || ||||| ||||| || Sbjct 392741 CTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTT 392800 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || || ||||| || ||| || || |||||||| | ||||| || || Sbjct 392801 TGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGT 392860 Query 195117 CAAAGTTTTTACGA 195130 | || || |||| Sbjct 392861 AAGCGTCTTGACGA 392874 >seq213 Length=714089 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| |||| || || | || || |||||||| Sbjct 265265 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 265206 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || ||||| || || ||||| || ||||| || || || Sbjct 265205 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 265146 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| ||| ||||| |||||||| | ||||| || || Sbjct 265145 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGT 265086 Query 195117 CAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153 | || || ||||| | ||||| || |||||| Sbjct 265085 TAGGGTCTTGACGAAGATCTGCATGATTGCCTACTTG 265049 >seq207 Length=219550 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | || || ||||||||||| || |||||||| Sbjct 185373 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 185314 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || || ||||| || ||||| || || || |||||| || || Sbjct 185313 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 185254 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || |||||||| || || |||||||||| ||||| || |||| || || ||||| Sbjct 185253 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 185195 >seq188 Length=580545 Score = 95.1 bits (104), Expect = 3e-14 Identities = 191/281 (68%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||| |||| |||||| | |||| || ||||||||||| ||| | | |||||||| | Sbjct 491961 TTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGACT 492020 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| || | || ||||| ||| ||||| || | || || || ||||| | Sbjct 492021 GGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTTG 492080 Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAA 160765 || | | || || | ||||| | ||| ||| | | || | | ||||||| || Sbjct 492081 AGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAA-GACCATGAAGGCTCAG 492139 Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825 | || ||| || |||||| | ||||| |||| |||| ||||| || ||| Sbjct 492140 AAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTAC 492199 Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 ||||||||| | |||||||| |||||||||||| |||| Sbjct 492200 AAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 492240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474833549092