Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq131 102 7e-17 >seq131 Length=561545 Score = 102 bits (112), Expect = 7e-17 Identities = 422/667 (63%), Gaps = 68/667 (10%) Strand=Plus/Minus Query 29776 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 29835 |||||||| | ||| | ||| || |||| || ||||| || |||||| || || Sbjct 345439 CTGGGCTCACGCTCCAACTGCACTTTGAGCGCATCAACGTGGTCAGCGTAGACATGTGCA 345380 Query 29836 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29894 || |||| | ||| | ||| || || || | || | || | || ||||||| Sbjct 345379 TCGCCCATGACGTGCGTCAAGCTG-CCAGGGACGAGGTCACATGCGCGGGCAATCATGTG 345321 Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954 ||| || || | |||||| |||||||| ||||| || ||||| ||||| || | |||| Sbjct 345320 CGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGCCCATATCGCAGGACCG 345261 Query 29955 CTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC--------------- 29984 |||||| |||||||| || ||||||||| Sbjct 345260 CTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGTCAGCGGGTGCACCGCG 345201 Query 29985 -GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 |||| ||||| ||||| | ||||| ||||| || || || ||||| Sbjct 345200 GGCTCGCGGGTAGGAGACGTAGAACTGCGCAAACATG---TGGCATGGCGGGAGGGCCAT 345144 Query 30030 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30089 | ||| ||||||||| |||| | || |||||| | ||| | || || | Sbjct 345143 CTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGT 345084 Query 30090 CCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30143 | | | || | || ||||| ||||| || || ||| |||| ||| || Sbjct 345083 CTTCAGCTTGTGGATGACCTCGGCG------AGCTGGTCGACGCCCTGGCCCGTGTAATC 345030 Query 30144 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCC 30203 | | | ||| ||||| || || || || | ||| ||||| ||||| || || || Sbjct 345029 CGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCC 344970 Query 30204 CAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263 ||||| || |||| | |||| || || |||| | || || | || ||||| Sbjct 344969 GAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTT 344910 Query 30264 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGA 30322 | ||||||||||||| || ||| |||| || | |||| |||| ||||| || Sbjct 344909 GCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GA 344851 Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAG 30380 |||||||||||||||| | | |||||| | || ||||| | ||| || || ||||| Sbjct 344850 CGAACCACAGCAGCTCAGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAG 344793 Query 30381 GGGAAAC 30387 ||| ||| Sbjct 344792 GGGCAAC 344786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615229507148