Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq131 102 7e-17
>seq131
Length=561545
Score = 102 bits (112), Expect = 7e-17
Identities = 422/667 (63%), Gaps = 68/667 (10%)
Strand=Plus/Minus
Query 29776 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 29835
|||||||| | ||| | ||| || |||| || ||||| || |||||| || ||
Sbjct 345439 CTGGGCTCACGCTCCAACTGCACTTTGAGCGCATCAACGTGGTCAGCGTAGACATGTGCA 345380
Query 29836 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29894
|| |||| | ||| | ||| || || || | || | || | || |||||||
Sbjct 345379 TCGCCCATGACGTGCGTCAAGCTG-CCAGGGACGAGGTCACATGCGCGGGCAATCATGTG 345321
Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954
||| || || | |||||| |||||||| ||||| || ||||| ||||| || | ||||
Sbjct 345320 CGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGCCCATATCGCAGGACCG 345261
Query 29955 CTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC--------------- 29984
|||||| |||||||| || |||||||||
Sbjct 345260 CTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGTCAGCGGGTGCACCGCG 345201
Query 29985 -GCTC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCAT 30029
|||| ||||| ||||| | ||||| ||||| || || || |||||
Sbjct 345200 GGCTCGCGGGTAGGAGACGTAGAACTGCGCAAACATG---TGGCATGGCGGGAGGGCCAT 345144
Query 30030 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30089
| ||| ||||||||| |||| | || |||||| | ||| | || || |
Sbjct 345143 CTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGT 345084
Query 30090 CCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30143
| | | || | || ||||| ||||| || || ||| |||| ||| ||
Sbjct 345083 CTTCAGCTTGTGGATGACCTCGGCG------AGCTGGTCGACGCCCTGGCCCGTGTAATC 345030
Query 30144 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCC 30203
| | | ||| ||||| || || || || | ||| ||||| ||||| || || ||
Sbjct 345029 CGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCC 344970
Query 30204 CAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263
||||| || |||| | |||| || || |||| | || || | || |||||
Sbjct 344969 GAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGCGAGCCGTT 344910
Query 30264 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGA 30322
| ||||||||||||| || ||| |||| || | |||| |||| ||||| ||
Sbjct 344909 GCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GA 344851
Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAG 30380
|||||||||||||||| | | |||||| | || ||||| | ||| || || |||||
Sbjct 344850 CGAACCACAGCAGCTCAGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTAGTAAGGAG 344793
Query 30381 GGGAAAC 30387
||| |||
Sbjct 344792 GGGCAAC 344786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408615229507148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |