Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq188 351 2e-91 seq463 140 6e-28 >seq188 Length=580545 Score = 351 bits (388), Expect = 2e-91 Identities = 894/1334 (67%), Gaps = 55/1334 (4%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA-GACTGCGTCAGGGC 221424 || ||||||| || |||||| || | | | |||| | ||| ||| || ||||| Sbjct 492654 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 492596 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGA 221483 |||||||||||||||||| |||||| |||||||||| || | ||||||||||| || Sbjct 492595 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGG-TCGCGAGCCTCGGGAGACTCGA 492537 Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 |||||||||| || | | ||| | || || || ||||| || |||| ||||||||| | Sbjct 492536 AGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGC 492477 Query 221544 TGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 ||| | | ||||| | ||| | || ||| || || || |||||||||||| | Sbjct 492476 GGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGA-ACAGGGTAGTGGTTGACGTCGAT--G 492421 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 ||| | |||||| || ||| ||| |||| ||| | || ||| | || | Sbjct 492420 ATTCT----GTTCAGGTTGCGGAC---AACGACCTGGGTGACCTCGTGGAGCTT---CTG 492371 Query 221662 CAACTCGCCG---CCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || ||| | || |||| | | || ||||| | | ||||| | |||||| Sbjct 492370 GAAGTCGTAGACTCCCTCGTTGTAG---TCAACAAAGGTGGGCAGGGCGAGCGAGGCCAG 492314 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || || || ||||| || | |||| || ||||| || ||||||||| Sbjct 492313 GTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGA 492254 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 || ||| || || |||| || || || |||||| ||||| || ||||||||||| Sbjct 492253 GCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAG 492194 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| ||||| |||||||| ||| ||| | || || | |||||| | |||| | Sbjct 492193 CATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCT-TCTGAG 492135 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGAGCAT 221952 | ||| ||| ||| ||||| | ||| || ||| | ||| | || | Sbjct 492134 CCTTCATGGTC---TTGCG---ACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCT 492081 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 |||||| || ||||| ||| ||||||| || || | ||| ||||| ||| | Sbjct 492080 --CAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGT 492023 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||||| | || | | ||||||| |||||||||||| || ||||| || || | || Sbjct 492022 CCAGTCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAA 491963 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 || || | || || ||||||| ||||| ||| || | || |||||| || || || Sbjct 491962 AAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAA 491903 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 | || |||||||| ||||| || || | ||| | ||| ||||| |||||||||||||| Sbjct 491902 GACATCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 491843 Query 222193 CTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 ||| || | | | ||| | |||||||| || || | || || | ||||||| Sbjct 491842 CTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGG 491784 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC---- 222307 | |||||| ||||| ||| || | ||| ||| | || | | || ||| Sbjct 491783 AGGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGC---GGATGC-GGTGGACGTTG 491728 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | || || |||||||| || |||||||||||||| ||||||| ||||| ||| Sbjct 491727 AGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATA 491668 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427 ||||| |||||||||||||| | || | || || ||||| |||| ||| | | | | Sbjct 491667 CCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGG 491608 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | || |||||| || || |||||| |||||| || ||| | || |||||||| | | Sbjct 491607 GTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTG 491548 Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTAC 222547 || || || | ||| | | | || ||| || || | |||| | |||| | Sbjct 491547 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATC 491488 Query 222548 ATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 |||| |||||| ||||| || || | |||| ||| ||||| ||| | |||| Sbjct 491487 ATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TGAGGAGGTATGATCTCTCCA 491430 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCA 222665 ||||||||| || ||||| | | || ||||| | | | | || | ||| | ||| | Sbjct 491429 AAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTCAA 491370 Query 222666 GCTCCGACTTGTGC 222679 |||| ||||||| Sbjct 491369 GCTCATCCTTGTGC 491356 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 492895 GTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGG 492836 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || |||||||||||||| |||||| | |||||||| || |||||||| || || Sbjct 492835 CTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGAC 492776 Query 221236 CAGCAGACTGTTGCG 221250 || ||| |||||| Sbjct 492775 GAGAAGAGAGTTGCG 492761 >seq463 Length=83378 Score = 140 bits (154), Expect = 6e-28 Identities = 343/521 (66%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| | |||||| |||||| |||||||||| | | ||| | | Sbjct 56434 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCC 56493 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | | |||| || || ||||| || || || ||||| ||||| ||||||||| | || Sbjct 56494 TTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 56553 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| || || |||||||| ||| ||| ||||||||| Sbjct 56554 GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAG 56613 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 || ||| | || |||||||| |||| || || |||||||| |||||| | ||| Sbjct 56614 CTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTC---TCAC 56670 Query 26050 TTGCTCCACAA--ACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 ||| | || || |||| || | | | |||||| || ||||| || Sbjct 56671 ---CTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAG 56727 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 || ||| ||||||| | | ||||||||| || Sbjct 56728 ATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAAC 56787 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 || |||| || |||||||||| ||| ||||||| || || || ||| |||| | Sbjct 56788 CTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCT-CT-TGGTTGCT----CTCGGC 56841 Query 26227 A--GAC----TCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAA 26280 | ||| |||||| | | ||||| || ||||| ||||| ||||| || ||| Sbjct 56842 AATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGC 56901 Query 26281 GGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || ||||||||||||||||| ||| | || | |||||| || Sbjct 56902 GGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCA 56942 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||||||||| |||||||||||| Sbjct 56038 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 56097 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT-CTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || | Sbjct 56098 TCCAAGGATCTCCACGACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTCATCTCG 56157 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || ||||| || || || || ||||| || |||| | Sbjct 56158 CACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGCGC 56217 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || ||| | |||||| || ||||| || ||||| || Sbjct 56218 TTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 56270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839273373440