Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq188 188 9e-43 seq463 96.9 4e-15 >seq188 Length=580545 Score = 188 bits (208), Expect = 9e-43 Identities = 965/1508 (64%), Gaps = 57/1508 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| | || ||| || || ||| |||| ||| Sbjct 491477 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 491536 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | || || ||| || |||||| |||| | | ||| |||||| | || || |||| Sbjct 491537 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCCACACTCT 491594 Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||| || ||||| || || || ||| ||||| ||||||||| ||| || |||||| Sbjct 491595 TCAACGCCGGTACCCCTCAGGCC-CAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAG 491653 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGG 75446 ||||| || | |||||||||| || || | || | ||||| | ||||| ||| || Sbjct 491654 GACTCTATTGAGGGTATCTATGACACCCTCA-AGACT-TGCGCCATGATCTCCAAGATGG 491711 Query 75447 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 75506 | || || ||||| | || |||| | | |||| || |||| || | Sbjct 491712 CCGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCA 491771 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 | || ||| || | ||| | | || ||||| || || || ||| ||| || |||| Sbjct 491772 CGAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCT 491831 Query 75567 ATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 | || | | || | ||| ||| || | |||| | ||| | || || ||| Sbjct 491832 ACGTCGA-CCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGG 491890 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || |||||| || | || ||| | || || || ||||| || | || |||| ||| Sbjct 491891 CACGCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGC 491950 Query 75683 TGTAGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | || |||||| | |||| |||||||| ||||| ||||||||| |||| ||| Sbjct 491951 GCCCGTGA--CCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGA 492008 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTG 75799 || ||| | ||| |||| | || || || || || || || || ||||| Sbjct 492009 AGAATGGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTAC 492067 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA--AGAGG----AGGGTAGAGCCAAT 75853 || ||||||||||| ||| | ||| ||||| || ||| | ||||| | ||| Sbjct 492068 GGCGAGGAGTTTGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG---CAA- 492123 Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 ||| | || | | || | | ||| | || || ||| | | ||||| |||||||| Sbjct 492124 --GACCAT-GAAGGCTCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGG 492180 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 | || | ||||| ||||||||||| ||| ||||| ||||| ||||| | || Sbjct 492181 TAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 492240 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 || ||| ||||| || || |||||||| ||| | |||||| | |||||| Sbjct 492241 CACTATCCGCAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGT 492300 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT------CAATGAAGAGAC 76086 ||||| ||||| |||| || ||||||| || | | ||| ||| | || || Sbjct 492301 CGCTGTCTGCAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACG-AGGGAG 492359 Query 76087 TCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAA 76146 || | || | | || || || || |||| || | ||| | || || || Sbjct 492360 TC-----TACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAA 492414 Query 76147 CCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACA 76206 | || |||| ||| || || || ||| || || || || || ||||| || Sbjct 492415 CAGAATCATCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCA 492474 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG- 76265 | | || || ||| | ||||| || ||||| || |||| || | ||| || | Sbjct 492475 CCGCCCCATCGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCG-TATGC 492533 Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 | || || || || || || | || ||||| || ||||| || |||| Sbjct 492534 CCTTCGAGTCTCCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACG 492593 Query 76326 CATCCCTGGAGGCGAGT-TGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 | |||| | || ||| | |||| | | | || |||| |||| | || Sbjct 492594 CTGCCCT--CACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGA 492651 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC--AAG 76441 |||||| || | || || || | || |||| ||| |||| |||| || || || | Sbjct 492652 GGGTTCCCCTGTTTCTCAGGGCATCCTCCAGTATGACATGT-GGAATGTCAAGCCCTCGG 492710 Query 76442 CTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 || || |||||||||| | | ||||| | || ||| || | ||| | || ||| | Sbjct 492711 ATC-TCTGGGACTGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCT 492769 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 ||| | | || || ||||| || ||| |||| | || |||||||| || || || ||| Sbjct 492770 CTTCTCGTCGCGCCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGC 492829 Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621 ||||| || ||||| | |||||||||| | | | || || |||||||| || Sbjct 492830 TTTGAGCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTT 492889 Query 76622 GTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 |||||| ||| | || || ||| | || ||||| |||||| | | |||||| Sbjct 492890 GTCAACCCTTGGCTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAG 492949 Query 76682 GATCTCAT 76689 | | ||| Sbjct 492950 AACCGCAT 492957 >seq463 Length=83378 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079 |||||||| | ||||| |||| ||| || || ||||| |||||||||| || Sbjct 56446 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTC---CTCCTTCGCCCAG 56502 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || |||| || || || ||||||||||||||| ||| | ||| | | || Sbjct 56503 CGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 56562 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| ||||| ||||| || || |||||| || || || || || Sbjct 56563 TTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCT 56622 Query 65200 CGAGATGAGGGTCTCCAC 65217 || ||||||||||| ||| Sbjct 56623 CGTGATGAGGGTCTTCAC 56640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566050410880