Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9 233 2e-55 seq188 190 2e-42 seq172 152 6e-31 seq280 134 2e-25 seq463 129 7e-24 >seq9 Length=467410 Score = 233 bits (258), Expect = 2e-55 Identities = 285/389 (73%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| | Sbjct 424061 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 424002 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||||||||||||||||| ||| || | || ||||| || |||||| || | | Sbjct 424001 CTCACCGAGGCCGACATCCAGCCCCAGCTGAACCGCCGCCGTCCCGGCCAGAGCTCCATC 423942 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | || ||||| ||||| ||||||||| |||| ||| ||||| ||| |||| || Sbjct 423941 ACGACCCCGCGAAACGAAAAGGATCGCGTCGTCATTCAGAGCGGCACCGAGTTCGGCGTC 423882 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337 || |||||| | || ||||| | | || ||| |||||||| ||| |||| Sbjct 423881 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAACGAGGACCAGCGCCCCAAGGACTAC 423822 Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | ||| |||| || | | || || ||||| |||||||||| |||||| | | Sbjct 423821 GGCAACTCCACCATGGACATGTTCCCCCGCCCCTCCCACGCCGACTGGACCTACCTCGAG 423762 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 |||||||| ||||||| || |||||||| ||||| || || |||||||||||| || Sbjct 423761 AAGTACGGAGTCAAGGCCTCCTCGGGCGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 423702 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||| ||||||||||| |||||||||| Sbjct 423701 CGCGTTGCCGCCGGCGCCCTCGCCGAGAA 423673 Score = 140 bits (154), Expect = 4e-27 Identities = 129/161 (80%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 ||||||||||| |||||||| || || ||||| ||||||| ||| | | ||||||| Sbjct 423440 GAGGACAGCATTGGCGGCACTGTCACCTGCGTCATTCGCAACCCGCCCTCCGCCCTCGGC 423381 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| ||| Sbjct 423380 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCCCATGCCATGCTCAGCATCCCCGCC 423321 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202 |||||||| |||||||| ||| |||| || |||| |||| Sbjct 423320 ACCAAGGGCTTCGAGATCGGC-TCGGGCTTCGGCGGCTGCG 423281 >seq188 Length=580545 Score = 190 bits (210), Expect = 2e-42 Identities = 338/495 (68%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| |||||||| || |||| |||||||| Sbjct 491842 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGA 491783 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | || | ||||| |||||| | ||| || | || Sbjct 491782 GGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACC 491723 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| |||||| ||||||||| | ||||| ||||| ||||| ||||| ||||| Sbjct 491722 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTC 491663 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || | || | || || Sbjct 491662 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 491603 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| ||||| | || ||||| |||| | |||||| || |||||| Sbjct 491602 GGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGT 491543 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||||| || || || || | |||||| Sbjct 491542 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCGAC 491498 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| | |||| | | |||| | |||| ||||| || Sbjct 491497 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGA 491438 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || ||| ||| ||| ||||| || || |||||||| | | |||||| Sbjct 491437 TCTCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 491378 Query 1630545 GGCGTCGAGGGCATC 1630559 | ||| || |||| Sbjct 491377 AGAGTCAAGCTCATC 491363 Score = 93.3 bits (102), Expect = 5e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 || || || ||||| || |||| || || || |||||||||| ||| || ||| ||| Sbjct 492510 TCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 492451 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 || | || ||||||||||||| |||||| | | ||| ||||||| || ||||||||| Sbjct 492450 TCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGG 492391 Query 1627990 ACGATCTCGTGCAG 1628003 || |||||| || Sbjct 492390 GTGACCTCGTGGAG 492377 Score = 89.7 bits (98), Expect = 6e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || || || || | || || || ||| |||||||||| |||| | Sbjct 492896 GGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGG 492837 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 ||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| | Sbjct 492836 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGA 492777 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCC 1627513 |||| || |||||||| | |||||||| || || | || || |||||||||| Sbjct 492776 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCC 492717 Query 1627514 AG 1627515 || Sbjct 492716 AG 492715 >seq172 Length=364528 Score = 152 bits (168), Expect = 6e-31 Identities = 99/109 (91%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||||||||||||||| || |||||| |||| |||||| | || |||||| Sbjct 273604 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 273545 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 273544 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 273496 >seq280 Length=705450 Score = 134 bits (148), Expect = 2e-25 Identities = 259/373 (69%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || |||| | | | ||||||||||||||||||| Sbjct 216243 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 216301 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| |||||| |||| Sbjct 216302 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 216361 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCC---AAATAAGGGGCCACCAGA-GGA 1726867 | ||||| | |||||| | | | ||| ||| || | |||| ||| || Sbjct 216362 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCCAGGAACTGCGGGG-----AGATGGT 216416 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926 | ||| | |||| ||| | |||| || | ||||| || || ||||| || || | Sbjct 216417 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 216473 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||||| ||| |||||| || Sbjct 216474 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 216533 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 ||||||||||| |||||||| ||||| ||||| |||| ||||||||||||| ||||| Sbjct 216534 GAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 216593 Query 1727047 AAGCGCGTCGCCG 1727059 || ||||||| Sbjct 216594 GAG---GTCGCCG 216603 >seq463 Length=83378 Score = 129 bits (142), Expect = 7e-24 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| | || ||||| Sbjct 56948 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 56889 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | ||||||| ||| || ||||| | | Sbjct 56888 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGAGAGCAACC 56829 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT- 868869 | ||||||||||| |||||||| |||||||| ||| ||| || ||||||||||| Sbjct 56828 AAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGC 56769 Query 868870 -GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||||| | ||||| | |||| ||| ||||| | ||| |||| ||| || ||||||| Sbjct 56768 AGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGA 56711 Query 868929 TGAT 868932 |||| Sbjct 56710 TGAT 56707 Score = 113 bits (124), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||||| |||||| |||| || |||||||| || || ||||| Sbjct 56634 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 56575 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| || ||| ||||| ||||| |||||||| || Sbjct 56574 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 56515 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356 | | | ||| |||| ||| ||| |||| | ||| | | | |||||||||| ||| Sbjct 56514 GGCAACGAGACGCTGGGCGAAG-----GAGGACTTCTCATCGCTAATCCACTTCAGGGCC 56460 Query 869357 CAGTCGGCCTTTTT 869370 ||||||||||| || Sbjct 56459 CAGTCGGCCTTCTT 56446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107100137210892