Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq9 233 2e-55
seq188 190 2e-42
seq172 152 6e-31
seq280 134 2e-25
seq463 129 7e-24
>seq9
Length=467410
Score = 233 bits (258), Expect = 2e-55
Identities = 285/389 (73%), Gaps = 6/389 (2%)
Strand=Plus/Minus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| |
Sbjct 424061 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 424002
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||||||||||||||||| ||| || | || ||||| || |||||| || | |
Sbjct 424001 CTCACCGAGGCCGACATCCAGCCCCAGCTGAACCGCCGCCGTCCCGGCCAGAGCTCCATC 423942
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| || ||||| ||||| ||||||||| |||| ||| ||||| ||| |||| ||
Sbjct 423941 ACGACCCCGCGAAACGAAAAGGATCGCGTCGTCATTCAGAGCGGCACCGAGTTCGGCGTC 423882
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337
|| |||||| | || ||||| | | || ||| |||||||| ||| ||||
Sbjct 423881 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAACGAGGACCAGCGCCCCAAGGACTAC 423822
Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| ||| |||| || | | || || ||||| |||||||||| |||||| | |
Sbjct 423821 GGCAACTCCACCATGGACATGTTCCCCCGCCCCTCCCACGCCGACTGGACCTACCTCGAG 423762
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
|||||||| ||||||| || |||||||| ||||| || || |||||||||||| ||
Sbjct 423761 AAGTACGGAGTCAAGGCCTCCTCGGGCGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 423702
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||||| ||||||||||| ||||||||||
Sbjct 423701 CGCGTTGCCGCCGGCGCCCTCGCCGAGAA 423673
Score = 140 bits (154), Expect = 4e-27
Identities = 129/161 (80%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
||||||||||| |||||||| || || ||||| ||||||| ||| | | |||||||
Sbjct 423440 GAGGACAGCATTGGCGGCACTGTCACCTGCGTCATTCGCAACCCGCCCTCCGCCCTCGGC 423381
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| |||
Sbjct 423380 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCCCATGCCATGCTCAGCATCCCCGCC 423321
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202
|||||||| |||||||| ||| |||| || |||| ||||
Sbjct 423320 ACCAAGGGCTTCGAGATCGGC-TCGGGCTTCGGCGGCTGCG 423281
>seq188
Length=580545
Score = 190 bits (210), Expect = 2e-42
Identities = 338/495 (68%), Gaps = 15/495 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| ||||| |||||||| || |||| ||||||||
Sbjct 491842 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGA 491783
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | || | ||||| |||||| | ||| || | ||
Sbjct 491782 GGTACCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACC 491723
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| |||||| ||||||||| | ||||| ||||| ||||| ||||| |||||
Sbjct 491722 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTC 491663
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || | || | || ||
Sbjct 491662 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 491603
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||||||| ||||| | || ||||| |||| | |||||| || ||||||
Sbjct 491602 GGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGT 491543
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||||| || || || || | ||||||
Sbjct 491542 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCGAC 491498
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| | |||| | | |||| | |||| ||||| ||
Sbjct 491497 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGA 491438
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || ||| ||| ||| ||||| || || |||||||| | | ||||||
Sbjct 491437 TCTCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 491378
Query 1630545 GGCGTCGAGGGCATC 1630559
| ||| || ||||
Sbjct 491377 AGAGTCAAGCTCATC 491363
Score = 93.3 bits (102), Expect = 5e-13
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929
|| || || ||||| || |||| || || || |||||||||| ||| || ||| |||
Sbjct 492510 TCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 492451
Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989
|| | || ||||||||||||| |||||| | | ||| ||||||| || |||||||||
Sbjct 492450 TCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGG 492391
Query 1627990 ACGATCTCGTGCAG 1628003
|| |||||| ||
Sbjct 492390 GTGACCTCGTGGAG 492377
Score = 89.7 bits (98), Expect = 6e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393
||||||| || || || || | || || || ||| |||||||||| |||| |
Sbjct 492896 GGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGG 492837
Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453
||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| |
Sbjct 492836 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGA 492777
Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCC 1627513
|||| || |||||||| | |||||||| || || | || || ||||||||||
Sbjct 492776 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCC 492717
Query 1627514 AG 1627515
||
Sbjct 492716 AG 492715
>seq172
Length=364528
Score = 152 bits (168), Expect = 6e-31
Identities = 99/109 (91%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||||||||||||||| || |||||| |||| |||||| | || ||||||
Sbjct 273604 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 273545
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 273544 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 273496
>seq280
Length=705450
Score = 134 bits (148), Expect = 2e-25
Identities = 259/373 (69%), Gaps = 18/373 (5%)
Strand=Plus/Plus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||||||||||| | |||||||| || || |||| | | | |||||||||||||||||||
Sbjct 216243 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 216301
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||||||||| | |||| |||||| ||||
Sbjct 216302 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 216361
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCC---AAATAAGGGGCCACCAGA-GGA 1726867
| ||||| | |||||| | | | ||| ||| || | |||| ||| ||
Sbjct 216362 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCCAGGAACTGCGGGG-----AGATGGT 216416
Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926
| ||| | |||| ||| | |||| || | ||||| || || ||||| || || |
Sbjct 216417 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 216473
Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986
||| || |||||| | | | | | | ||||| ||| |||||| ||
Sbjct 216474 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 216533
Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046
||||||||||| |||||||| ||||| ||||| |||| ||||||||||||| |||||
Sbjct 216534 GAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 216593
Query 1727047 AAGCGCGTCGCCG 1727059
|| |||||||
Sbjct 216594 GAG---GTCGCCG 216603
>seq463
Length=83378
Score = 129 bits (142), Expect = 7e-24
Identities = 176/244 (72%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| ||| || |||||||||||||| | || |||||
Sbjct 56948 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 56889
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || ||||||| | ||||||| ||| || ||||| | |
Sbjct 56888 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGAGAGCAACC 56829
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT- 868869
| ||||||||||| |||||||| |||||||| ||| ||| || |||||||||||
Sbjct 56828 AAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGC 56769
Query 868870 -GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|||||| | ||||| | |||| ||| ||||| | ||| |||| ||| || |||||||
Sbjct 56768 AGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGA 56711
Query 868929 TGAT 868932
||||
Sbjct 56710 TGAT 56707
Score = 113 bits (124), Expect = 6e-19
Identities = 142/194 (73%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||||| |||||| |||| || |||||||| || || |||||
Sbjct 56634 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 56575
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||||| | ||| || ||| ||||| ||||| |||||||| ||
Sbjct 56574 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 56515
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356
| | | ||| |||| ||| ||| |||| | ||| | | | |||||||||| |||
Sbjct 56514 GGCAACGAGACGCTGGGCGAAG-----GAGGACTTCTCATCGCTAATCCACTTCAGGGCC 56460
Query 869357 CAGTCGGCCTTTTT 869370
||||||||||| ||
Sbjct 56459 CAGTCGGCCTTCTT 56446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107100137210892
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