Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq188 116 3e-21 seq213 107 2e-18 seq341 98.7 9e-16 >seq188 Length=580545 Score = 116 bits (128), Expect = 3e-21 Identities = 385/592 (65%), Gaps = 24/592 (4%) Strand=Plus/Minus Query 138424 CCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAG 138483 ||||| | ||||||||||| || ||||| ||||| ||||| || | || | Sbjct 492972 CCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGA 492913 Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || | || | ||| | ||||| || ||||| || | || ||||| ||| Sbjct 492912 TCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAG 492853 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| |||| | |||||||| | |||||||| |||| ||||| | ||| | || Sbjct 492852 ATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCA 492793 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663 ||||||||| ||| || | |||||| || || | |||||| |||| || | ||||| Sbjct 492792 GTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTC 492733 Query 138664 AGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATT 138723 | | ||||||||| | ||| || || |||||||| || ||||| | || Sbjct 492732 AAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATG 492673 Query 138724 CCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAA 138779 ||| |||| |||| || ||||||| | ||| || ||| | |||| Sbjct 492672 CCCTGAGAAAC--AGGGGA--ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCA- 492618 Query 138780 CTCGTTGC-TCGCC---TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 | ||| || | ||| ||| | | ||| || || ||| |||| || |||| Sbjct 492617 ---GCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGA 492561 Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895 | || ||||||| |||| | ||||| ||||| | ||| || || || || | Sbjct 492560 GGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGAC 492501 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---G 138951 | || || || | |||| ||||| ||||||| || ||| ||||| || || Sbjct 492500 CCTGGACACCGAGACCGATGGGGCGGTGGCGCA----TGTTGCTGTTGCGAGCCTCCTGA 492445 Query 138952 ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003 | ||| || | ||| || ||||||||| |||| | || || || || |||| Sbjct 492444 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCT 492393 >seq213 Length=714089 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||| ||||| ||||| || || || || || | || Sbjct 265062 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 265121 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 265122 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 265181 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| ||||| | | | | || || || ||| Sbjct 265182 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 265241 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || |||||||| |||| |||| || || Sbjct 265242 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGG 265288 >seq341 Length=430742 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || |||||||| || || || ||| | | Sbjct 392656 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 392597 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 392596 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 392537 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| || ||||| || |||||||| ||| | | | |||| || || ||| Sbjct 392536 CAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 392477 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | || | || | || ||||| Sbjct 392476 ATCCAGAAGGAGTCTACCCTGCACCTTGTCCTTCGCCTCCGTGGAGG 392430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894923109280