Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq188 116 3e-21
seq213 107 2e-18
seq341 98.7 9e-16
>seq188
Length=580545
Score = 116 bits (128), Expect = 3e-21
Identities = 385/592 (65%), Gaps = 24/592 (4%)
Strand=Plus/Minus
Query 138424 CCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAG 138483
||||| | ||||||||||| || ||||| ||||| ||||| || | || |
Sbjct 492972 CCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGA 492913
Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543
|| || | || | ||| | ||||| || ||||| || | || ||||| |||
Sbjct 492912 TCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAG 492853
Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603
|||||| |||| | |||||||| | |||||||| |||| ||||| | ||| | ||
Sbjct 492852 ATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCA 492793
Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663
||||||||| ||| || | |||||| || || | |||||| |||| || | |||||
Sbjct 492792 GTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTC 492733
Query 138664 AGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATT 138723
| | ||||||||| | ||| || || |||||||| || ||||| | ||
Sbjct 492732 AAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATG 492673
Query 138724 CCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAA 138779
||| |||| |||| || ||||||| | ||| || ||| | ||||
Sbjct 492672 CCCTGAGAAAC--AGGGGA--ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCA- 492618
Query 138780 CTCGTTGC-TCGCC---TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835
| ||| || | ||| ||| | | ||| || || ||| |||| || ||||
Sbjct 492617 ---GCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGA 492561
Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895
| || ||||||| |||| | ||||| ||||| | ||| || || || || |
Sbjct 492560 GGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGAC 492501
Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---G 138951
| || || || | |||| ||||| ||||||| || ||| ||||| || ||
Sbjct 492500 CCTGGACACCGAGACCGATGGGGCGGTGGCGCA----TGTTGCTGTTGCGAGCCTCCTGA 492445
Query 138952 ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003
| ||| || | ||| || ||||||||| |||| | || || || || ||||
Sbjct 492444 ACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCT 492393
>seq213
Length=714089
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || ||||| ||||| ||||| || || || || || | ||
Sbjct 265062 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 265121
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || || ||
Sbjct 265122 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 265181
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||||| || || ||||| ||||| | | | | || || || |||
Sbjct 265182 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 265241
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || |||||||| |||| |||| || ||
Sbjct 265242 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGG 265288
>seq341
Length=430742
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || |||||||| || || || ||| | |
Sbjct 392656 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 392597
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 392596 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 392537
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| || ||||| || |||||||| ||| | | | |||| || || |||
Sbjct 392536 CAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 392477
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || ||| | || | || | || |||||
Sbjct 392476 ATCCAGAAGGAGTCTACCCTGCACCTTGTCCTTCGCCTCCGTGGAGG 392430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894923109280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |