Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq172 152 8e-31 seq75 116 6e-20 seq463 111 2e-18 seq188 96.9 5e-14 >seq172 Length=364528 Score = 152 bits (168), Expect = 8e-31 Identities = 99/109 (91%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||||||||||||| | || ||||||||||| |||||| Sbjct 273604 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 273545 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 273544 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 273496 >seq75 Length=126237 Score = 116 bits (128), Expect = 6e-20 Identities = 204/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204 |||||||| |||| |||||| | ||| | | ||||| || |||||| | | Sbjct 95897 GACGTCGTCCGTAACCGCATCAAAGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 95954 Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264 ||||||||||| || | || |||||||| |||||| || | || || | ||||| || | Sbjct 95955 GCCGCCACAAGCTGGTGATTCTCGATGAAGCCGACAGCATGACATCAGGCGCCCAACAAG 96014 Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324 | ||||| || ||||| | ||| ||||||| ||||| || || | |||||||| Sbjct 96015 CTCTCCGCCGAACGATGGAGATTTACTCCAACACTACGCGCTTCGCCTTCGCCTGCAATC 96074 Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384 ||| | | ||||||| | || ||| || ||||||||| | || | || || | Sbjct 96075 AGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTCCGGTACGCCCGGC 96134 Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 ||||||||| ||| | | | ||| ||| |||| ||||| || || ||||| Sbjct 96135 TCACCGACGAGCAGGTGGTCAAGCGGCTGTTGCAGATCATCGAGGCGGAGAAGGT 96189 >seq463 Length=83378 Score = 111 bits (122), Expect = 2e-18 Identities = 179/253 (71%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| ||| || |||||||||||||| | | Sbjct 56956 TGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 56897 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | || ||||||| | | |||| ||| || |||| Sbjct 56896 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGA 56837 Query 794011 GCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 | | | |||| ||||||||||| || || ||||||||||| ||| ||| || |||| Sbjct 56836 GAGCAACCAAG-AGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTC 56778 Query 794070 ATGCCGA--TGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 ||||||| |||||| | ||||| | |||| | | ||||| | ||| |||| ||| | Sbjct 56777 ATGCCGAGCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAG 56720 Query 794128 CCTCGATGATGAT 794140 | |||| |||||| Sbjct 56719 CATCGACGATGAT 56707 Score = 102 bits (112), Expect = 1e-15 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| || ||| ||||||| || | || | | || ||||||| |||||||||||| Sbjct 56369 GTGTCAATAGCGTTGAAGAGGTACGTGCG-CTGGGCAGGCTCCTTGATGTAGGTGTCGAT 56311 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| |||||||||||||| ||||||||||| || || ||| ||||||||||| ||||| Sbjct 56310 GAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAGCCATAGAAGCA 56251 Score = 95.1 bits (104), Expect = 2e-13 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||||| |||||| ||| || |||||||| || || ||||| Sbjct 56634 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 56575 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| || ||| ||||| ||||| |||||||| || Sbjct 56574 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 56515 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517 | | ||||| |||| ||| || | ||| | ||| | | | |||||||||| ||| Sbjct 56514 GGCAACGAGACGCTGGGCGAAGG-----AGGACTTCTCATCGCTAATCCACTTCAGGGCC 56460 Query 794518 CACTCTGCCTTTTT 794531 || || ||||| || Sbjct 56459 CAGTCGGCCTTCTT 56446 >seq188 Length=580545 Score = 96.9 bits (106), Expect = 5e-14 Identities = 262/404 (65%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671 ||||| ||||||| ||||||||| | ||||| |||| ||||||| |||||| |||| Sbjct 492243 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 492184 Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731 ||| |||||| |||| ||| || |||||| |||| | | | || || | Sbjct 492183 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCAT---G 492127 Query 2071732 GTCCT-CGCGCG--GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCG 2071788 ||| | || | |||| | | ||| ||||| | ||||| Sbjct 492126 GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCG 492067 Query 2071789 TGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC 2071848 | ||| ||| |||||| || ||| ||||| | ||| | |||||| || || Sbjct 492066 TAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTC 492007 Query 2071849 ACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908 |||| | ||| || |||||| |||| ||| || || || || || || || Sbjct 492006 TCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGA 491947 Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968 ||||||||||||||||||||| || || | |||||| || ||||||||||| Sbjct 491946 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAA 491887 Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| ||||| ||| || || || ||||||| ||| || Sbjct 491886 GGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 491843 Score = 86.0 bits (94), Expect = 1e-10 Identities = 350/543 (64%), Gaps = 24/543 (4%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| ||||| |||| || |||| | | |||||||| ||||||||||| Sbjct 493242 TGGTCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCC 493183 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-AT--TC 2069367 ||||| |||||| | ||| || | ||||| || || || | | || || Sbjct 493182 GTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTAT---CTTGCCCATGGTC 493126 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 ||| | || | |||||||||||| |||||||| ||| | |||||||| Sbjct 493125 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 493066 Query 2069428 GCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484 ||||| | | | || |||| | || | |||||| || |||||| ||||||||||| Sbjct 493065 GCCATCTGCACAACAGT-ACGCTGC--GAGATCTCCCAAACAGTCTTGTACAGGGCCTTG 493009 Query 2069485 AGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGG 2069544 | | | || | | | | | | ||| | || || | | | || |||| | Sbjct 493008 ACCTCAGTAGGAATGTTGGGG------ATGTTCTGGATGGAACCGTTCTCGGCAATGATG 492955 Query 2069545 CGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGC-- 2069602 |||| | | | | |||||| || | | | | | | || || | | | Sbjct 492954 CGGTTCTTCATGGCATCGGACCACAGACC-CATGTCGAC--GAGATCCTTCAAGAGCCAA 492898 Query 2069603 -GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATG 2069661 ||||||| || || || || | || || || ||| |||||||||| ||| | Sbjct 492897 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 492838 Query 2069662 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 2069721 ||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| Sbjct 492837 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 492778 Query 2069722 ACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCC 2069781 ||||| || |||||||| | |||| ||| | | || || || || ||||||||| Sbjct 492777 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 492718 Query 2069782 CAG 2069784 ||| Sbjct 492717 CAG 492715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916195765708964