Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq172 152 8e-31
seq75 116 6e-20
seq463 111 2e-18
seq188 96.9 5e-14
>seq172
Length=364528
Score = 152 bits (168), Expect = 8e-31
Identities = 99/109 (91%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||||||||||||||||||||||||| | || ||||||||||| ||||||
Sbjct 273604 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 273545
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 273544 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 273496
>seq75
Length=126237
Score = 116 bits (128), Expect = 6e-20
Identities = 204/295 (69%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204
|||||||| |||| |||||| | ||| | | ||||| || |||||| | |
Sbjct 95897 GACGTCGTCCGTAACCGCATCAAAGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 95954
Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264
||||||||||| || | || |||||||| |||||| || | || || | ||||| || |
Sbjct 95955 GCCGCCACAAGCTGGTGATTCTCGATGAAGCCGACAGCATGACATCAGGCGCCCAACAAG 96014
Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324
| ||||| || ||||| | ||| ||||||| ||||| || || | ||||||||
Sbjct 96015 CTCTCCGCCGAACGATGGAGATTTACTCCAACACTACGCGCTTCGCCTTCGCCTGCAATC 96074
Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384
||| | | ||||||| | || ||| || ||||||||| | || | || || |
Sbjct 96075 AGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTCCGGTACGCCCGGC 96134
Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439
||||||||| ||| | | | ||| ||| |||| ||||| || || |||||
Sbjct 96135 TCACCGACGAGCAGGTGGTCAAGCGGCTGTTGCAGATCATCGAGGCGGAGAAGGT 96189
>seq463
Length=83378
Score = 111 bits (122), Expect = 2e-18
Identities = 179/253 (71%), Gaps = 6/253 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | || ||| ||| || |||||||||||||| | |
Sbjct 56956 TGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 56897
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | || ||||||| | | |||| ||| || ||||
Sbjct 56896 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGA 56837
Query 794011 GCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069
| | | |||| ||||||||||| || || ||||||||||| ||| ||| || ||||
Sbjct 56836 GAGCAACCAAG-AGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTC 56778
Query 794070 ATGCCGA--TGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127
||||||| |||||| | ||||| | |||| | | ||||| | ||| |||| ||| |
Sbjct 56777 ATGCCGAGCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAG 56720
Query 794128 CCTCGATGATGAT 794140
| |||| ||||||
Sbjct 56719 CATCGACGATGAT 56707
Score = 102 bits (112), Expect = 1e-15
Identities = 96/120 (80%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| || ||| ||||||| || | || | | || ||||||| ||||||||||||
Sbjct 56369 GTGTCAATAGCGTTGAAGAGGTACGTGCG-CTGGGCAGGCTCCTTGATGTAGGTGTCGAT 56311
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| |||||||||||||| ||||||||||| || || ||| ||||||||||| |||||
Sbjct 56310 GAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAGCCATAGAAGCA 56251
Score = 95.1 bits (104), Expect = 2e-13
Identities = 138/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| || || ||| ||||| |||||| ||| || |||||||| || || |||||
Sbjct 56634 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 56575
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||||| ||| || ||| ||||| ||||| |||||||| ||
Sbjct 56574 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 56515
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517
| | ||||| |||| ||| || | ||| | ||| | | | |||||||||| |||
Sbjct 56514 GGCAACGAGACGCTGGGCGAAGG-----AGGACTTCTCATCGCTAATCCACTTCAGGGCC 56460
Query 794518 CACTCTGCCTTTTT 794531
|| || ||||| ||
Sbjct 56459 CAGTCGGCCTTCTT 56446
>seq188
Length=580545
Score = 96.9 bits (106), Expect = 5e-14
Identities = 262/404 (65%), Gaps = 6/404 (1%)
Strand=Plus/Minus
Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671
||||| ||||||| ||||||||| | ||||| |||| ||||||| |||||| ||||
Sbjct 492243 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 492184
Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731
||| |||||| |||| ||| || |||||| |||| | | | || || |
Sbjct 492183 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCAT---G 492127
Query 2071732 GTCCT-CGCGCG--GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCG 2071788
||| | || | |||| | | ||| ||||| | |||||
Sbjct 492126 GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCG 492067
Query 2071789 TGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC 2071848
| ||| ||| |||||| || ||| ||||| | ||| | |||||| || ||
Sbjct 492066 TAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTC 492007
Query 2071849 ACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908
|||| | ||| || |||||| |||| ||| || || || || || || ||
Sbjct 492006 TCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGA 491947
Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968
||||||||||||||||||||| || || | |||||| || |||||||||||
Sbjct 491946 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAA 491887
Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||| ||||| ||| || || || ||||||| ||| ||
Sbjct 491886 GGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 491843
Score = 86.0 bits (94), Expect = 1e-10
Identities = 350/543 (64%), Gaps = 24/543 (4%)
Strand=Plus/Minus
Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310
||||||||||| ||||| |||| || |||| | | |||||||| |||||||||||
Sbjct 493242 TGGTCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCC 493183
Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-AT--TC 2069367
||||| |||||| | ||| || | ||||| || || || | | || ||
Sbjct 493182 GTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTAT---CTTGCCCATGGTC 493126
Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427
||| | || | |||||||||||| |||||||| ||| | ||||||||
Sbjct 493125 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 493066
Query 2069428 GCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484
||||| | | | || |||| | || | |||||| || |||||| |||||||||||
Sbjct 493065 GCCATCTGCACAACAGT-ACGCTGC--GAGATCTCCCAAACAGTCTTGTACAGGGCCTTG 493009
Query 2069485 AGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGG 2069544
| | | || | | | | | | ||| | || || | | | || |||| |
Sbjct 493008 ACCTCAGTAGGAATGTTGGGG------ATGTTCTGGATGGAACCGTTCTCGGCAATGATG 492955
Query 2069545 CGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGC-- 2069602
|||| | | | | |||||| || | | | | | | || || | | |
Sbjct 492954 CGGTTCTTCATGGCATCGGACCACAGACC-CATGTCGAC--GAGATCCTTCAAGAGCCAA 492898
Query 2069603 -GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATG 2069661
||||||| || || || || | || || || ||| |||||||||| ||| |
Sbjct 492897 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 492838
Query 2069662 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 2069721
||| | |||| ||||||||| ||||||||| || |||| || |||||| ||||
Sbjct 492837 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 492778
Query 2069722 ACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCC 2069781
||||| || |||||||| | |||| ||| | | || || || || |||||||||
Sbjct 492777 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 492718
Query 2069782 CAG 2069784
|||
Sbjct 492717 CAG 492715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916195765708964
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |