Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq341 105 1e-17
seq213 105 1e-17
>seq341
Length=430742
Score = 105 bits (116), Expect = 1e-17
Identities = 168/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 82570 CCATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTA 82629
||||| | || |||||| | || ||| || || | || || || || || ||||| |
Sbjct 392188 CCATTGCTTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGA 392247
Query 82630 TATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTT 82689
| || |||||| | | | ||| || || | || || ||||||||||| || | |
Sbjct 392248 TGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCT 392307
Query 82690 GTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749
| || || ||||| || || ||||| || |||||||| | || || || |||||||| |
Sbjct 392308 GCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGT 392367
Query 82750 CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809
| || || || || | || |||||||| || ||||| ||||| || || || ||||
Sbjct 392368 CCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCA 392427
Query 82810 T 82810
|
Sbjct 392428 T 392428
>seq213
Length=714089
Score = 105 bits (116), Expect = 1e-17
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||||| || ||||| || || || || ||||| || || || || |
Sbjct 265290 TACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 265231
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||||| || || || |||||||||||||| || | || || || || |
Sbjct 265230 AGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 265171
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| | || ||||| || || || || || || |
Sbjct 265170 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCA 265111
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
| || | || || ||||| || || | ||||| || || |||||||| |||
Sbjct 265110 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGATT 265058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981821212081364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |