Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq341 105 1e-17 seq213 105 1e-17 >seq341 Length=430742 Score = 105 bits (116), Expect = 1e-17 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 82570 CCATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTA 82629 ||||| | || |||||| | || ||| || || | || || || || || ||||| | Sbjct 392188 CCATTGCTTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGA 392247 Query 82630 TATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTT 82689 | || |||||| | | | ||| || || | || || ||||||||||| || | | Sbjct 392248 TGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCT 392307 Query 82690 GTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749 | || || ||||| || || ||||| || |||||||| | || || || |||||||| | Sbjct 392308 GCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGT 392367 Query 82750 CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 | || || || || | || |||||||| || ||||| ||||| || || || |||| Sbjct 392368 CCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCA 392427 Query 82810 T 82810 | Sbjct 392428 T 392428 >seq213 Length=714089 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || ||||| || || || || ||||| || || || || | Sbjct 265290 TACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 265231 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || |||||||||||||| || | || || || || | Sbjct 265230 AGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 265171 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || ||||| || || || || || || | Sbjct 265170 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCA 265111 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | || | || || ||||| || || | ||||| || || |||||||| ||| Sbjct 265110 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGATT 265058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821212081364