Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq188 297 2e-75 seq213 122 8e-23 seq341 116 4e-21 seq463 111 2e-19 seq207 109 5e-19 >seq188 Length=580545 Score = 297 bits (328), Expect = 2e-75 Identities = 1004/1544 (65%), Gaps = 51/1544 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| ||||| || || || || || ||| | || | |||| || | || Sbjct 492894 TTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 492835 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| || Sbjct 492834 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACG 492775 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 || || |||||||| | |||| | | || || | ||||| ||| ||||||||||| Sbjct 492774 AGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG 492715 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || ||| || | || ||||||||||| ||||| || ||||| | | | ||| Sbjct 492714 AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAA 492655 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCGC 148558 |||||||||| ||| || || | | || ||||| | ||| | | ||| || Sbjct 492654 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGC 492596 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTCG---CTTT 148614 ||| ||| || |||||| || | | ||||||| | ||| | |||| | Sbjct 492595 AGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG----GTCGCGAGCCTCGGGAGACT 492540 Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674 || | |||||||| || || || || || ||||| ||||| || || | || |||| Sbjct 492539 CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGG 492480 Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733 | ||||| |||||| | ||| || ||| || | || ||||||||| ||||||| Sbjct 492479 GGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGATG 492421 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792 || ||| || ||||| || || |||| || | | | ||| | || ||||| Sbjct 492420 ATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 492361 Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844 |||| || || | | | || || ||||| ||||| || ||||| || Sbjct 492360 ACTCCCTCGTTGTAGTCAACAAAG-GTGGG--CAGGGCGAGCGAGGCCAGGTTGCAGACA 492304 Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904 || |||||| || |||| |||||| | ||||| | ||| || ||| || ||| Sbjct 492303 GCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATA 492244 Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 ||| | |||||| || |||||||||| |||| || |||||||| |||||| | || Sbjct 492243 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 492184 Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTT 149022 ||||| || ||| | || | ||| | | | || | ||| || ||| Sbjct 492183 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGAGC-----CTT 492131 Query 149023 GCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGC 149074 || || | |||||||| ||||||||| | ||| | || ||| ||| | Sbjct 492130 CATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCAAACTC 492074 Query 149075 CTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCC 149134 |||||||||||| ||| | || || ||||| | || ||||||||||| | ||| | || Sbjct 492073 CTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCC 492014 Query 149135 GTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCG 149194 | | | ||| | |||||| || || ||||| | |||||| ||| | ||||| || Sbjct 492013 ATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACG 491954 Query 149195 CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGC 149254 || || || ||| ||| ||||| | | | | ||| | || || Sbjct 491953 GGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGC 491894 Query 149255 GTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGAC 149311 |||||| ||||||| ||| | |||| || || |||| ||||| ||||||||||| Sbjct 491893 GTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGAC 491834 Query 149312 GTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTT 149371 || ||| | ||||||| || || || | |||||| | | || ||| || ||||| Sbjct 491833 GTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTT 491774 Query 149372 AGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC 149431 || | ||| |||| || || | ||| ||||||| || ||||| || Sbjct 491773 CGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACC 491714 Query 149432 GCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGT 149490 | | ||| ||||| |||| |||| ||| || ||||| ||||| || || Sbjct 491713 GGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCAATAGAGT 491655 Query 149491 CGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550 | ||||||| | || ||||| ||| ||| || | | | || ||||| || Sbjct 491654 CCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCGTTGA 491595 Query 149551 ACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609 | | ||||| |||||| || || | || || | ||||| | ||| | |||| Sbjct 491594 AGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTTTCGATG 491536 Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669 ||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| ||| Sbjct 491535 ACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGT 491476 Query 149670 CGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCA 149729 | ||| || | ||| ||| ||||| | ||| | || | |||||| |||| Sbjct 491475 CTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAGCCG 491416 Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 ||||| | ||||| ||||||||| | | | | ||||| | ||| Sbjct 491415 AAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 491372 >seq213 Length=714089 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| ||| | ||| |||||||||| Sbjct 265267 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGC 265208 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || ||||||||||| || |||||||| |||||||| |||| Sbjct 265207 TGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 265148 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||||| | |||||| || | ||||| || || || Sbjct 265147 TTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCC 265088 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 265087 GTTAGGGTCTTGACGAAGATCTGCATG 265061 >seq341 Length=430742 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| ||| || ||| |||||| ||| Sbjct 392963 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 393022 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| || ||||||||||| || || ||||| |||||||| |||| Sbjct 393023 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATC 393082 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | || |||| || ||| || || | ||||| ||| |||||| Sbjct 393083 TTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 393142 Query 133635 GT 133636 || Sbjct 393143 GT 393144 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| | || ||| ||| | ||||| | |||||| || Sbjct 392232 GTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCA-TCCTCCAACTGCTTACC 392290 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 392291 AGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTT 392350 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||||| | | ||| || || | || | || || || |||| || Sbjct 392351 GACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGT 392410 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 392411 CTTGACGAAAATTTGCAT 392428 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||||||| || || |||||| ||| Sbjct 392679 AAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGC 392738 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || | ||||||||||| || || ||||| |||||||| ||| Sbjct 392739 TGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATC 392798 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | || || | | ||| || || | ||||| ||| |||||| Sbjct 392799 TTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCG 392858 Query 133635 GTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 392859 GTAAGCGTCTTGACGA 392874 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || || ||| ||| | || || |||||||| | Sbjct 392459 GGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCTTCCAGCTGCTTTC 392517 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || |||||||||||||| ||||| || |||||||| |||||| || Sbjct 392518 CGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACT 392577 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | || || || | ||| | || ||||| || || | Sbjct 392578 TGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGG 392637 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 392638 TCTTGACGAAGATCTGCAT 392656 >seq463 Length=83378 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || ||||| ||||| || ||||| || || || |||||||||||| || ||| Sbjct 56657 AGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTC 56598 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||| | || | |||||| |||| |||| ||| ||| || ||| Sbjct 56597 AGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 56538 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||||| ||| ||| ||||| || | |||| ||| || | | | ||| | Sbjct 56537 AAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCG 56478 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||||||| |||||| |||||||| ||||| | ||| || Sbjct 56477 CTAATCCACTTCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGG 56434 >seq207 Length=219550 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || | |||||||||||||| |||||||| ||||| Sbjct 185341 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 185282 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || || | ||| | Sbjct 185281 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 185222 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 185221 GGTCTTACCCGTCAGGGTCTTCACGAAA 185194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417923646240