Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq188 116 4e-21 >seq188 Length=580545 Score = 116 bits (128), Expect = 4e-21 Identities = 567/887 (64%), Gaps = 24/887 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || || || ||||| | | || | ||| ||| | ||| Sbjct 492894 TTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 492835 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| |||| || ||||| || || || | ||| | || || |||||| ||| || Sbjct 492834 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACG 492775 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | | || || || | ||||| | || | |||||||||| | ||||||||| Sbjct 492774 AGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAG 492715 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | ||||||| | || ||||||||||| |||||||| | || || | || Sbjct 492714 AGATCCGAGGGCTTGACATTCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAA 492655 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190 || || |||| |||| || || || |||| | ||| | | || ||| | Sbjct 492654 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATG--GTGAGGG 492597 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | | | ||| ||||| ||| ||| | ||||| ||| || || || |||| Sbjct 492596 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGA 492537 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 | |||||||| ||| || |||||||| || | |||||||| ||||| ||||| || | Sbjct 492536 AGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGC 492477 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAAT 147368 | || |||||| | | || || || | || ||||||||| || || || Sbjct 492476 GGTGGCGCATGTTGCT--GTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGAT 492419 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-AG 147427 |||| ||||| || || || || | || | | ||| |||| ||| || || | Sbjct 492418 TCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 492359 Query 147428 TCC--CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGC 147485 ||| ||| | | || || | | || ||||| || ||||| |||||||| || Sbjct 492358 TCCCTCGTTGTAGTCA---ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGC 492302 Query 147486 CGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544 ||| || |||| ||| ||||| | || || | ||| |||||| || || | Sbjct 492301 GACCTCATCAGGCG-CGCAGTACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGAT-A 492244 Query 147545 CTCCCAA-ATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 | |||| || | ||| ||||| || || ||| || || ||| |||||||| | || Sbjct 492243 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 492184 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660 || |||||| || | || | ||| | ||| || | ||| || || Sbjct 492183 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC---AGAGCTTCTGAGCCTTCATG 492127 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || ||| |||| | |||||| ||||||||| ||||||||| |||||| Sbjct 492126 GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCG 492067 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA 147767 ||||| ||||| ||||| || || | | || ||||| || | ||| Sbjct 492066 TAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCA 492020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608364163360