Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq131 107 2e-18 >seq131 Length=561545 Score = 107 bits (118), Expect = 2e-18 Identities = 283/440 (64%), Gaps = 44/440 (10%) Strand=Plus/Minus Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 || |||| | ||||| || ||||||| |||||| || ||||||||||| || || |||| Sbjct 345336 CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGC 345277 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG---------------CTCCCCGT 147100 |||| || | |||| |||||||||||| || || ||| |||| Sbjct 345276 CCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGT 345217 Query 147101 CGGCC---------------------------ACGTAAAACTG-GCACAGGATGTGGCAC 147132 | || ||||| ||||| ||| | |||||||| Sbjct 345216 CAGCGGGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTGCGCAAAC-ATGTGGCAT 345158 Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192 ||||| || ||||| ||||||||||||||||| || || | | || | | Sbjct 345157 GGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGG 345098 Query 147193 CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCC 147252 | || ||| |||| | || | ||| ||| |||||||| |||||||||||| Sbjct 345097 TCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGTCGACGCCCTGGCCC 345038 Query 147253 CCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312 ||| | ||| | ||| || ||| ||| |||||||| | ||| ||||| ||||| Sbjct 345037 GTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAG 344978 Query 147313 ACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGG 147372 || || || |||||||| | | |||||||| || | | | ||| |||||| | Sbjct 344977 ACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGC 344918 Query 147373 GACCCGTGGGCGTCCCAGAT 147392 || |||| | |||||||||| Sbjct 344917 GAGCCGTTGCCGTCCCAGAT 344898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583484528246400