Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016-
04-12] 476 sequences; 53,216,229 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq131 107 2e-18
>seq131
Length=561545
Score = 107 bits (118), Expect = 2e-18
Identities = 283/440 (64%), Gaps = 44/440 (10%)
Strand=Plus/Minus
Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055
|| |||| | ||||| || ||||||| |||||| || ||||||||||| || || ||||
Sbjct 345336 CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGC 345277
Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG---------------CTCCCCGT 147100
|||| || | |||| |||||||||||| || || ||| ||||
Sbjct 345276 CCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGT 345217
Query 147101 CGGCC---------------------------ACGTAAAACTG-GCACAGGATGTGGCAC 147132
| || ||||| ||||| ||| | ||||||||
Sbjct 345216 CAGCGGGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTGCGCAAAC-ATGTGGCAT 345158
Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192
||||| || ||||| ||||||||||||||||| || || | | || | |
Sbjct 345157 GGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGG 345098
Query 147193 CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCC 147252
| || ||| |||| | || | ||| ||| |||||||| ||||||||||||
Sbjct 345097 TCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGTCGACGCCCTGGCCC 345038
Query 147253 CCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312
||| | ||| | ||| || ||| ||| |||||||| | ||| ||||| |||||
Sbjct 345037 GTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAG 344978
Query 147313 ACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGG 147372
|| || || |||||||| | | |||||||| || | | | ||| |||||| |
Sbjct 344977 ACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCGCGC 344918
Query 147373 GACCCGTGGGCGTCCCAGAT 147392
|| |||| | ||||||||||
Sbjct 344917 GAGCCGTTGCCGTCCCAGAT 344898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583484528246400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |