Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618735.1_202016- 04-12] 476 sequences; 53,216,229 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq188 165 1e-34 seq463 131 2e-24 seq280 91.5 2e-12 >seq188 Length=580545 Score = 165 bits (182), Expect = 1e-34 Identities = 342/504 (68%), Gaps = 19/504 (4%) Strand=Plus/Plus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||| | || ||| |||||||| | | | ||| ||||| |||| ||||| Sbjct 491356 GCACAAGGATGAGCTTGACTCTGCCATCGTCTATGACCGCGACTTCAACTACCAATACTT 491415 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||| ||| | || ||||| ||| | || | | | |||| | Sbjct 491416 CGGCTTCAAGACTTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAG 491475 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| |||||||||||||| |||| | |||| || ||||| Sbjct 491476 ACCCCAGCACATGATCATGCGTGTCGCCGTTGG--TATCTGGG-GTGACGACG------- 491525 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGC-AGTTGTTCACCTCA- 259918 | |||| ||| ||| |||||| | |||||| ||| |||| |||| |||| Sbjct 491526 -----TTGAGCGCGTCATCGAAACCTACAACCTGATGTCG-AGCAAGTTCTTCA-CTCAC 491578 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | ||||| ||||| || ||||| || || | | ||| || || ||||| || Sbjct 491579 GCCTCTCCCACACTCTTCAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTC 491638 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || || || ||||| ||||||||||| |||||| ||||| | Sbjct 491639 GTCGACATGAAGGAGGACTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATG 491698 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| |||||| ||||| ||| | || ||| | |||||| | ||| | Sbjct 491699 ATCTCCAAGATGGCCGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCA 491758 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 || | || ||||| ||||| |||||||| | || || ||||| || || || ||| Sbjct 491759 TATATTGCCGGCACGAACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAAC 491818 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||||||||||||| Sbjct 491819 AACACTGCTCGCTACGTCGACCAG 491842 Score = 89.7 bits (98), Expect = 7e-12 Identities = 349/545 (64%), Gaps = 24/545 (4%) Strand=Plus/Plus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCT 262937 |||||||||||| || || || | | || ||||| || | |||||||| | || Sbjct 492715 CTGGGACTGGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCT 492774 Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997 ||| |||| |||||| || |||| || ||||||||| ||||||||| |||| || || Sbjct 492775 CGTCGCGCCCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 492834 Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057 | | ||| |||||||||| ||| || || || | || || || || ||||| Sbjct 492835 GCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAA 492894 Query 263058 CCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCG 263117 || || | ||| | || | || |||||| | | | | |||| Sbjct 492895 CCCTTGGCTCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCG 492954 Query 263118 GCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCT 263177 ||||||| | | || || | ||| | | | || | || | || | Sbjct 492955 CATCATTGCCGAGAACGGTTCCATCCAGAACATCCCCAAC------ATTCCTACTGAGGT 493008 Query 263178 CAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGC 263234 |||||| || | |||||| || |||||| | | | || || ||| | ||||| Sbjct 493009 CAAGGCCCTGTACAAGACTGTTTGGGAGATCTCGCAGCG---TACTGTTGTGCAGATGGC 493065 Query 263235 GGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCC 263294 |||||||| | ||| |||||||| |||||||||||| | || | ||||| Sbjct 493066 TGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCC 493125 Query 263295 GAC---GGCCGAGAGCATCACGTCGATGCA---CGCCTATGCGTGGCGTCGCGGCCTCAA 263348 ||| || | || || || ||||| |||| | ||| | |||||| || Sbjct 493126 GACCATGGGCAAG---ATAACCAGCATGCATTTCGCC---GGCTGGAAGCTCGGCCTGAA 493179 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| ||||||||||| |||||||| | | | ||||| ||||||| ||||||||||| Sbjct 493180 GACGGGCATGTACTACCTGCGCACGCAGGCTGCTGCTGCTCCCATTCAGTTCACCGTCGA 493239 Query 263409 TCAGG 263413 |||| Sbjct 493240 CCAGG 493244 >seq463 Length=83378 Score = 131 bits (144), Expect = 2e-24 Identities = 237/340 (70%), Gaps = 15/340 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| | || | Sbjct 56037 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 56095 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | | ||| || ||| | ||| Sbjct 56096 TGTCCAAGGATCTCCACG----ACTGGAACAATAAGATCAACGAGGATGAGAAGTACTTC 56151 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||| |||||||||| || |||||| || ||||| || |||||| ||| Sbjct 56152 ATCTCGCACATCCTCGCCTTCTT-CGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGT 56210 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| | || ||||| |||| || || || ||||| || Sbjct 56211 CGAGCGCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 56270 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || ||||||||||| || |||||||||||| ||||||| Sbjct 56271 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGA 56330 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106 || | | || | || ||||||| ||| || ||||| Sbjct 56331 GCCTGCCCAG-CGCACGTACCTCTTCAACGCTATTGACAC 56369 Score = 111 bits (122), Expect = 2e-18 Identities = 182/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||||||| || ||| |||| ||| | ||||| | | |||| | ||||| | ||| Sbjct 56707 ATCATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCC--TTGCG 56764 Query 1456583 CTC--ATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| ||||||||||| ||| | || ||| |||||||||| | ||||| |||||||| Sbjct 56765 CTCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTTGTTGCCGACCG 56822 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||| | | || |||||| || ||| |||| | | ||||||| || | | Sbjct 56823 CCTCTTGGTTGCTCTCGGC-AATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCA 56881 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| || ||| || | || ||| ||| Sbjct 56882 TGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACC 56941 Query 1456760 CCAAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 56942 AGAAGGCCGGTGTCA 56956 Score = 104 bits (114), Expect = 3e-16 Identities = 118/156 (76%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| |||||||||| | | | ||| | |||| ||| ||| | Sbjct 56446 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCCCA 56501 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| ||||| | ||| ||||| || ||||| ||||| ||| || ||| | |||| Sbjct 56502 GCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 56561 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| || || ||||||||||| Sbjct 56562 CTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCT 56597 >seq280 Length=705450 Score = 91.5 bits (100), Expect = 2e-12 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| |||| || |||||||||||| |||| | ||||||||| | || || | ||| Sbjct 216377 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 216318 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| || Sbjct 216317 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 216259 Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914 | | || | |||||| |||| |||| Sbjct 216258 CATCGGCGCCGCCGCC--GCCAAGCACC 216233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177765288925112